View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9009_low_2 (Length: 915)
Name: NF9009_low_2
Description: NF9009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9009_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 717; Significance: 0; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 17 - 855
Target Start/End: Complemental strand, 5035203 - 5034374
Alignment:
| Q |
17 |
aatatcgtcggtggacactcaattaagaatctctgcaagagctgtgaccttcttcaagaggtcaaagtggttggtggtcgtgttgcaagatatgcgtttc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5035203 |
aatatcgtcggtggacactcaattaagaatctctgcaagagctgtgaccttcttcaagaggtcaaagtggttggtggtcgtgttgctcgatatgcgtttc |
5035104 |
T |
|
| Q |
117 |
gtggtcctcgtcctcctctacaatatcaatgagcttcaagaaccagttgcagggaaaggagaataaaggctgaacttgcctcaccagtgatgaatgcaag |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||| |
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| T |
5035103 |
gtggtcctcgtcctcctctacaatatcaatgagcttcaagaaccagttgcagggaaaggagaataaaagctgaacttgcctcactagtaatgaatgcaag |
5035004 |
T |
|
| Q |
217 |
atttcgattaaaacctgctacaaaaactaatttgcacaatggaaaccgatttgcagggcacacaataggtctattcgcaagtcatatattttcttgtaga |
316 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5035003 |
atttcga----------ctacaaaaactaatttgcacaatggaaaccgatttgcagggcacacaccaggtctattcgcaagtcatatattttcttgtaga |
5034914 |
T |
|
| Q |
317 |
acaaatagtggtattcaagtaaggattcgggtgcaactgttcacattaggcatccgcacaacattgaattagatgacttgatttttatatagttttggca |
416 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5034913 |
acaaataatggtattcaagtaaggattcgggtgcaactgttcacattaggcatccgcacaacattgaattagatgacttgatttttatttagttttggca |
5034814 |
T |
|
| Q |
417 |
gaactggaaggaaaatttactacttcagatgatataaggatgttatattcttacttgattttattatcaaacttgtgtctagtagatgttcgtttgttac |
516 |
Q |
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| T |
5034813 |
gaactggaaggaaaatttactacttcagatgatctaaggatgttatattcttacttgattttattatcaaacttgtgtctagtagatgttcgtttgttac |
5034714 |
T |
|
| Q |
517 |
tcaatctgt-tttatgtgcttagaatgttaataattattcaaaatcttttaccagttttatgtttaacattcaacacatctttttaatttggttgaatct |
615 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5034713 |
tcaatcttcctttatgtgcttagaatgttaataattattcaaagtcttttaccagttttatgtttaacattcaatacatctttttaatttggttgaatct |
5034614 |
T |
|
| Q |
616 |
ccgaatatctatttcattcattttgatatgaaattagaaacttctccaagcatggtgaaatagtcattgttcatgacttaacacttcatgtctttgcact |
715 |
Q |
| |
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|| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5034613 |
cctgatatctatttcattcatattgatgtgaaattagaaacttctccaagcatggtgaaatagtcattgttcatgacttaacacttcatgtctttgcact |
5034514 |
T |
|
| Q |
716 |
catcttctttttccttctaatgctgctgctgctatattcaatcaatagaaagcagtggtcagattgttgagaacattttaagttggtggtggtcctgtaa |
815 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5034513 |
catcttctttttccttctaatgctgctgctgctatattcaatcaatagaaagcagtggtcacattgttgagaacattttaagttggtggtggtcctgtaa |
5034414 |
T |
|
| Q |
816 |
tataattgagccatataaattaggcaaaaaatatagattt |
855 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||| |
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| T |
5034413 |
tataattgagccatataaattaggcaaaaaatgtagattt |
5034374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 610 - 748
Target Start/End: Complemental strand, 2489483 - 2489345
Alignment:
| Q |
610 |
gaatctccgaatatctatttcattcattttgatatgaaattagaaacttctccaagcatggtgaaatagtcattgttcatgacttaacacttcatgtctt |
709 |
Q |
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||||||| |||||||||||||||||||||||| | |||||||||||||||| |||| ||||||||| |||||||||| |||| ||||| | |||||| |
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| T |
2489483 |
gaatctctaaatatctatttcattcattttgattttaaattagaaacttctcgaagcctggtgaaatggtcattgttctcgactcaacaccacttgtctt |
2489384 |
T |
|
| Q |
710 |
tgcactcatcttctttttccttctaatgctgctgctgct |
748 |
Q |
| |
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||||||||||||||||| ||||| ||||||||||||||| |
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| T |
2489383 |
tgcactcatcttcttttaccttccaatgctgctgctgct |
2489345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 158 - 290
Target Start/End: Complemental strand, 2533246 - 2533112
Alignment:
| Q |
158 |
accagttgcagggaaaggagaataaaggctgaacttgcctcaccagtgatgaatgcaagatttcgattaaaacctgctacaaaaactaatttgcacaatg |
257 |
Q |
| |
|
|||| |||||||||| ||||||||| ||||||| |||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
2533246 |
accacttgcagggaatggagaataagagctgaacatgcctcacaagtgatgaatgcaggatttcgattaaaacctgctgcaaaaactaatttgcacaaat |
2533147 |
T |
|
| Q |
258 |
gaaa--ccgatttgcagggcacacaataggtctat |
290 |
Q |
| |
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|| | | |||||||||||||||||| |||||||| |
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| T |
2533146 |
gagatgctgatttgcagggcacacaacaggtctat |
2533112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 649 - 748
Target Start/End: Complemental strand, 2524500 - 2524401
Alignment:
| Q |
649 |
ttagaaacttctccaagcatggtgaaatagtcattgttcatgacttaacacttcatgtctttgcactcatcttctttttccttctaatgctgctgctgct |
748 |
Q |
| |
|
||||||||||||| |||||| || |||| | ||||||| ||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2524500 |
ttagaaacttctctaagcatagttaaattgacattgttattgactcaacacttcatttctttgcactcatcttcttttgccttctaatgctgctgctgct |
2524401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 749 - 830
Target Start/End: Complemental strand, 5040142 - 5040061
Alignment:
| Q |
749 |
atattcaatcaatagaaagcagtggtcagattgttgagaacattttaagttggtggtggtcctgtaatataattgagccata |
830 |
Q |
| |
|
||||||||||||||||| |||||||||| | |||||||||| ||||| || ||||||||||||||||||||||||| ||||| |
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| T |
5040142 |
atattcaatcaatagaaggcagtggtcacagtgttgagaactttttatgtaggtggtggtcctgtaatataattgaaccata |
5040061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 2533894 - 2533820
Alignment:
| Q |
17 |
aatatcgtcggtggacactcaattaagaatctctgcaagagctgtgaccttcttcaagaggtcaaagtggttggtggt |
94 |
Q |
| |
|
||||||||| ||| ||||||||||| ||||||||||||| ||||||| ||||||||| ||||||||||||||||| |
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|
| T |
2533894 |
aatatcgtcagtgagcactcaattaaaaatctctgcaagaactgtgac---cttcaagagctcaaagtggttggtggt |
2533820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 2525322 - 2525262
Alignment:
| Q |
31 |
acactcaattaagaatctctgcaagagctgtgaccttcttcaagaggtcaaagtggttggtggt |
94 |
Q |
| |
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||||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |
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| T |
2525322 |
acactcagttaagaatctctgcaggaactgtgaccttc---aagaggtcaaagtggttggtggt |
2525262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 2490694 - 2490641
Alignment:
| Q |
32 |
cactcaattaagaatctctgcaagagctgtgaccttcttcaagaggtcaaagtg |
85 |
Q |
| |
|
|||||| |||| |||||||||||| |||||||||||||||||||| ||||||| |
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|
| T |
2490694 |
cactcagttaaagatctctgcaagaactgtgaccttcttcaagaggccaaagtg |
2490641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 401 - 449
Target Start/End: Complemental strand, 2489630 - 2489582
Alignment:
| Q |
401 |
ttatatagttttggcagaactggaaggaaaatttactacttcagatgat |
449 |
Q |
| |
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||||| |||| |||||||||| ||| ||||||||||||||||||||||| |
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| T |
2489630 |
ttataaagttctggcagaacttgaatgaaaatttactacttcagatgat |
2489582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 300 - 354
Target Start/End: Complemental strand, 2489740 - 2489687
Alignment:
| Q |
300 |
atatattttcttgtagaacaaatagtggtattcaagtaaggattcgggtgcaact |
354 |
Q |
| |
|
||||||||| |||||||||||| || |||| ||||||||||||| |||||||||| |
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|
| T |
2489740 |
atatatttt-ttgtagaacaaacagaggtagtcaagtaaggatttgggtgcaact |
2489687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 886 - 915
Target Start/End: Complemental strand, 5034369 - 5034340
Alignment:
| Q |
886 |
tagatcaatatggtatgatattagagatga |
915 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
5034369 |
tagatcaatatggtatgatattagagatga |
5034340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 359
Target Start/End: Original strand, 5095577 - 5095638
Alignment:
| Q |
298 |
tcatatattttcttgtagaacaaatagtggtattcaagtaaggattcgggtgcaactgttca |
359 |
Q |
| |
|
|||| |||||||||| ||||||||||| |||| ||||||| |||| |||||||||||||| |
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|
| T |
5095577 |
tcatgtattttcttgaagaacaaatagaggtagtcaagtacagattttggtgcaactgttca |
5095638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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