View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9009_low_21 (Length: 377)
Name: NF9009_low_21
Description: NF9009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9009_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 33 - 369
Target Start/End: Complemental strand, 43317058 - 43316728
Alignment:
| Q |
33 |
ttttgattcataatcaatcaaccttcacagtagccagtagccaccgtttgagaattaaataattaatctcaactaattattttttaaaacaatagggagg |
132 |
Q |
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| T |
43317058 |
tttttattcataatcaatcaaccttcacagtagccagtagccaccatttgagaattaattaattaatctcaactaattattttttaaaacaatagggagg |
43316959 |
T |
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| Q |
133 |
atcataaccaaagcaataattaggatcaggagtagtaaaatggcaaaacatgtccatttacgggtattcttttgatttttcctagcaacatgtaattgtt |
232 |
Q |
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| T |
43316958 |
attataaccaaagcaataattagga------gtagtaaaatggcaaaacatgtccattcacgggtattcttttgatttttcctagcaacatgtaattgtt |
43316865 |
T |
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| Q |
233 |
gtactcctcctctaacatacgaatttgctcgcatcatttggctctcaatgtcattcaactcttcaccttgggattggaccaaaactgccatgtccagaaa |
332 |
Q |
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| T |
43316864 |
gtactcctcctctaacatacgaatttgctcgcatcatttggctctcaatgtcattcaactcttcaccttgggattggaccaaaactgccatgtccagaaa |
43316765 |
T |
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| Q |
333 |
cacttgatgcagctcttttagatttctctctatctct |
369 |
Q |
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| T |
43316764 |
cacttgatgcagctcttttagatttctctctatctct |
43316728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 172 - 369
Target Start/End: Original strand, 24710060 - 24710257
Alignment:
| Q |
172 |
atggcaaaacatgtccatttacgggtattcttttgatttttcctagcaacatgtaattgttgtactcctcctctaacatacgaatttgctcgcatcattt |
271 |
Q |
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| T |
24710060 |
atggcaatacaagtccattttctggtattcatttggtgcttcctagcaacatgcaattgttggaccccacctctaacatacgaattagcacgtgccacgt |
24710159 |
T |
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| Q |
272 |
ggctctcaatgtcattcaactcttcaccttgggattggaccaaaactgccatgtccagaaacacttgatgcagctcttttagatttctctctatctct |
369 |
Q |
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| T |
24710160 |
ggctttcaatattatccaattgttcaccttgtgattgaaccaaaacagacatgtccataaacacttggtgaagctccattagatttctttctatctct |
24710257 |
T |
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