View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9009_low_25 (Length: 340)

Name: NF9009_low_25
Description: NF9009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9009_low_25
NF9009_low_25
[»] chr6 (19 HSPs)
chr6 (17-324)||(23289546-23289853)
chr6 (120-322)||(23283205-23283410)
chr6 (139-323)||(23257567-23257760)
chr6 (17-114)||(23283443-23283540)
chr6 (141-300)||(23251617-23251782)
chr6 (141-300)||(23247205-23247370)
chr6 (139-302)||(23266149-23266315)
chr6 (17-113)||(23251795-23251891)
chr6 (35-83)||(23506635-23506683)
chr6 (47-98)||(23391241-23391292)
chr6 (35-82)||(23633978-23634025)
chr6 (164-277)||(23592973-23593086)
chr6 (206-262)||(23633810-23633866)
chr6 (17-80)||(23257804-23257867)
chr6 (178-239)||(23582892-23582953)
chr6 (178-239)||(23586775-23586836)
chr6 (50-83)||(23586943-23586976)
chr6 (41-81)||(23506799-23506839)
chr6 (51-83)||(23583060-23583092)


Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 324
Target Start/End: Complemental strand, 23289853 - 23289546
Alignment:
Q  17 aaagacattcaaagggcagctggagaagctgctgaggctttcagaccagacaagactttaatgactactgtcattgacacggttgtggctgttgtcgttg 116  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23289853 aaagacattcaaagggcagctggagaagccgctgaggctttcagaccagacaagactttaatgactactggcattgacacggttgtggctgttgtcgttg 23289754  T
Q  117 cggtggaagaagaggaagaagtgttgaatatgttttgtgtggaaggcgaaaaagaagagcaagtgttgaatatgcaagagttgtggaaaaatatggcact 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23289753 cggtggaagaagaggaagaagtgttgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgcaagagttgtggaaaaatatggcact 23289654  T
Q  217 aatgtcccctacacatagtttggagcatgagtatgaagattttgatgtacaatttcaagatgaagaggtatcgctatggaacttctgaacttgaagtgtt 316  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23289653 aatgtcccctacacatagttttgagcatgagtatgaagattttgatgtacaatttcaagatgaagaggtatcgctatggaacttctgaacttgaagtgtt 23289554  T
Q  317 tggtttac 324  Q
    ||||||||    
T  23289553 tggtttac 23289546  T

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Target: chr6; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 120 - 322
Target Start/End: Complemental strand, 23283410 - 23283205
Alignment:
Q  120 tggaagaagaggaagaagtgttgaatatgttttgtgtggaaggcgaaaaagaagagcaagtgttgaatatgcaagagttgtggaaaaatatggcactaat 219  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||  |||| ||||||  ||||||||  ||||    
T  23283410 tggaagaagaggaggaagtgttgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgtcagagatgtggaggaatatggcgttaat 23283311  T
Q  220 gtcccctacacatagtttggagcatgagtatgaagattttgatgtacaa---tttcaagatgaagaggtatcgctatggaacttctgaacttgaagtgtt 316  Q
    |||||||||||||||| ||||||||||||||||| |||||||| |||||   |||||||||||||||||||| ||||||||||||| || |||||| |||    
T  23283310 gtcccctacacatagtatggagcatgagtatgaaaattttgatttacaagactttcaagatgaagaggtatccctatggaacttctaaaattgaagagtt 23283211  T
Q  317 tggttt 322  Q
    ||||||    
T  23283210 tggttt 23283205  T

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Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 139 - 323
Target Start/End: Complemental strand, 23257760 - 23257567
Alignment:
Q  139 gttgaatatgttttgtgtggaaggcgaaaaagaagagcaagtgttgaatatgcaagagttgtggaaaaatatggcactaatgtcccctacacatagtttg 238  Q
    ||||||||||||||||||||||| |||| ||||  || || |||||||||||| ||| |||| ||  ||||||||||||||||||||||||||||| ||     
T  23257760 gttgaatatgttttgtgtggaagtcgaagaagagcaggaaatgttgaatatgccagaattgttgaggaatatggcactaatgtcccctacacatagcttt 23257661  T
Q  239 gag---catg---agtatgaagattttgatgtacaa---tttcaagatgaagaggtatcgctatggaacttctgaacttgaagtgtttggttta 323  Q
    |||   ||||   ||||||||||| || ||||||||   ||||||||||| |||||||| ||||||||||||| ||||| | ||||||||||||    
T  23257660 gagtatcatgatcagtatgaagatattcatgtacaagactttcaagatgatgaggtatcactatggaacttctaaacttaatgtgtttggttta 23257567  T

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Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 23283540 - 23283443
Alignment:
Q  17 aaagacattcaaagggcagctggagaagctgctgaggctttcagaccagacaagactttaatgactactgtcattgacacggttgtggctgttgtcgt 114  Q
    |||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||  | ||||||||| ||||||||||| |||||    
T  23283540 aaagacattcaaagggcagctgcagaagccgccgaggctttcagaccagacaagactttaatgactaacgacattgacaccgttgtggctgtcgtcgt 23283443  T

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Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 141 - 300
Target Start/End: Complemental strand, 23251782 - 23251617
Alignment:
Q  141 tgaatatgttttgtgtggaaggcgaaaaagaagagcaagtgttgaatatgcaagagttgtggaaaaatatggcactaatgtcccctacacatag-tttgg 239  Q
    ||||||||||| |||| |||| ||||   |||||| ||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||| |||||    
T  23251782 tgaatatgtttcgtgttgaagtcgaa---gaagaggaagtgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgg 23251686  T
Q  240 --agcatg---agtatgaagattttgatgtacaa---tttcaagatgaagaggtatcgctatggaactt 300  Q
      | ||||   ||||||||||| || || |||||   ||||||||||| |||||||| |||||||||||    
T  23251685 gtatcatgatcagtatgaagatattcatatacaagactttcaagatgatgaggtatcactatggaactt 23251617  T

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Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 300
Target Start/End: Complemental strand, 23247370 - 23247205
Alignment:
Q  141 tgaatatgttttgtgtggaaggcgaaaaagaagagcaagtgttgaatatgcaagagttgtggaaaaatatggcactaatgtcccctacacatagtttgga 240  Q
    |||||||||||||||||||||  ||  || | ||| || |||||||||||| |||||||||||  ||||||||  | ||||| ||||||||||| || ||    
T  23247370 tgaatatgttttgtgtggaagttgatgaacaggaggaaatgttgaatatgccagagttgtggaggaatatggcgttgatgtcacctacacatagctttga 23247271  T
Q  241 g---catgagtatgaagattttgatgtacaa---tttcaagatgaagaggtatcgctatggaactt 300  Q
    |   ||||||||||| ||| || ||||||||   ||||||||||| |||||||| |||||||||||    
T  23247270 gtatcatgagtatgacgatattcatgtacaagattttcaagatgatgaggtatcactatggaactt 23247205  T

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Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 302
Target Start/End: Complemental strand, 23266315 - 23266149
Alignment:
Q  139 gttgaatatgttttgtgtggaaggcgaaaaagaagagcaagtgttgaatatgcaagagttgtggaaaaatatggcactaatgtcccctacacatagtttg 238  Q
    |||||||||||||||||||||||      |||||||| || ||||||||||||  ||||| ||||  ||||||||||||||||||||||||||||| ||     
T  23266315 gttgaatatgttttgtgtggaag------aagaagaggaaatgttgaatatgccggagttttggaggaatatggcactaatgtcccctacacatagcttt 23266222  T
Q  239 gag---catg---agtatgaagattttgatgtacaa---tttcaagatgaagaggtatcgctatggaacttct 302  Q
    |||   ||||   | |||||||||||| || | |||   ||||||||||| |||||||| |||||||||||||    
T  23266221 gagtatcatgatcaatatgaagattttcattttcaagactttcaagatgatgaggtatcactatggaacttct 23266149  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 23251891 - 23251795
Alignment:
Q  17 aaagacattcaaagggcagctggagaagctgctgaggctttcagaccagacaagactttaatgactactgtcattgacacggttgtggctgttgtcg 113  Q
    ||||| ||||||| |||||||  | |||| || || ||||| ||||||||||| ||||||||||| | || ||||||||| ||||| ||||||||||    
T  23251891 aaagatattcaaaaggcagctacaaaagccgccgaagcttttagaccagacaatactttaatgaccagtgacattgacaccgttgtagctgttgtcg 23251795  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 23506683 - 23506635
Alignment:
Q  35 gctggagaagctgctgaggctttcagaccagacaagactttaatgacta 83  Q
    |||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  23506683 gctgcagaagctactgaggctttcagaccagacaagactttaacgacta 23506635  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 23391292 - 23391241
Alignment:
Q  47 gctgaggctttcagaccagacaagactttaatgactactgtcattgacacgg 98  Q
    |||||||||||||||||||||||||||| ||| |||| || |||||||||||    
T  23391292 gctgaggctttcagaccagacaagacttcaattactaatgacattgacacgg 23391241  T

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Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 23634025 - 23633978
Alignment:
Q  35 gctggagaagctgctgaggctttcagaccagacaagactttaatgact 82  Q
    |||| ||||||||| |||||||||||||||||||||||||||| ||||    
T  23634025 gctgcagaagctgccgaggctttcagaccagacaagactttaacgact 23633978  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 277
Target Start/End: Complemental strand, 23593086 - 23592973
Alignment:
Q  164 gaaaaagaagagcaagtgttgaatatgcaagagttgtggaaaaatatggcactaatgtcccctacacatagtttggagcatgagtatgaagattttgatg 263  Q
    |||||||| ||| |||||||||| || | ||||| || ||  |||||||| ||||||||||||||||||||  | |||||||| ||| ||| | ||||||    
T  23593086 gaaaaagaggaggaagtgttgaacattccagagtcgttgaggaatatggctctaatgtcccctacacatagcgttgagcatgaatatcaaggtattgatg 23592987  T
Q  264 tacaatttcaagat 277  Q
     | | |||||||||    
T  23592986 cagactttcaagat 23592973  T

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Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 23633866 - 23633810
Alignment:
Q  206 aatatggcactaatgtcccctacacatagtttggagcatgagtatgaagattttgat 262  Q
    |||||||| |||||||||||||||||||| |||| |||||||| |||| || |||||    
T  23633866 aatatggctctaatgtcccctacacatagcttggggcatgagtttgaacatattgat 23633810  T

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Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 23257867 - 23257804
Alignment:
Q  17 aaagacattcaaagggcagctggagaagctgctgaggctttcagaccagacaagactttaatga 80  Q
    ||||| ||||||| ||| ||||  |||||||| || ||||| ||||||||||||||||||||||    
T  23257867 aaagatattcaaaaggcggctgctgaagctgccgaagcttttagaccagacaagactttaatga 23257804  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 23582953 - 23582892
Alignment:
Q  178 agtgttgaatatgcaagagttgtggaaaaatatggcactaatgtcccctacacatagtttgg 239  Q
    |||| |||| ||||||||| ||||||  |||||||| |||||||| ||||||||||| ||||    
T  23582953 agtgatgaacatgcaagagatgtggagtaatatggcgctaatgtctcctacacatagcttgg 23582892  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 23586836 - 23586775
Alignment:
Q  178 agtgttgaatatgcaagagttgtggaaaaatatggcactaatgtcccctacacatagtttgg 239  Q
    |||| |||| ||||||||| ||||||  |||||||| |||||||| ||||||||||| ||||    
T  23586836 agtgatgaacatgcaagagatgtggagtaatatggcgctaatgtctcctacacatagcttgg 23586775  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 23586976 - 23586943
Alignment:
Q  50 gaggctttcagaccagacaagactttaatgacta 83  Q
    ||||||||||||||||||||||||||| ||||||    
T  23586976 gaggctttcagaccagacaagactttattgacta 23586943  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 23506839 - 23506799
Alignment:
Q  41 gaagctgctgaggctttcagaccagacaagactttaatgac 81  Q
    |||||||||||||| |||||||||| ||||||| |||||||    
T  23506839 gaagctgctgaggcattcagaccaggcaagactgtaatgac 23506799  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 23583092 - 23583060
Alignment:
Q  51 aggctttcagaccagacaagactttaatgacta 83  Q
    |||||||||||||||||||||||||| ||||||    
T  23583092 aggctttcagaccagacaagactttattgacta 23583060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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