View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9009_low_27 (Length: 335)
Name: NF9009_low_27
Description: NF9009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9009_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 38367235 - 38367437
Alignment:
| Q |
1 |
ttaaaattgtacttattgtgataattatggtgaaaatgttggacaccaaactgtattgatgttatgtttaatgatatgagatgagtttgcttttgtcaaa |
100 |
Q |
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| T |
38367235 |
ttaaaattgtacttattgtgataattatggtgaaaatgttggaccccaaactgtattgatgttatgtttaatgatatgagatgagtttgcttttgtcaaa |
38367334 |
T |
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| Q |
101 |
aaagtatgtaattgattcataattaaattattaatacatcacatcaaactaagtgccttgaagttacaactattaagctagcacctaatgttaaaactat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38367335 |
aaagtatgtaattgattcataattaaattattaatacatcacatcaaactaagtgccttgaagttacaactattaagctagcacctaatgttaaaactat |
38367434 |
T |
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| Q |
201 |
ata |
203 |
Q |
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||| |
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| T |
38367435 |
ata |
38367437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 200 - 320
Target Start/End: Original strand, 38367684 - 38367804
Alignment:
| Q |
200 |
tataacttacttcaaaatatgcttactgtataacaataaattatggatatgattcatgacgtttgcattagaataaatgtcgacatcaaagggaccataa |
299 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38367684 |
tataacttacttcaaaatatgcttactatataacaataaattatggatatgattcatgacgtttgcattagaataaatgtcgacatcaaagggaccataa |
38367783 |
T |
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| Q |
300 |
ttgttgagcaaacaactcatt |
320 |
Q |
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||||||||||||||||||||| |
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| T |
38367784 |
ttgttgagcaaacaactcatt |
38367804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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