View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9009_low_29 (Length: 316)
Name: NF9009_low_29
Description: NF9009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9009_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 12104349 - 12104648
Alignment:
| Q |
1 |
gtttcttgatccttgccaagcaattgtccattggccttgtgtgtggcaagaatctcactggagattttgggttgatttgttccaacctgtgaaagcaaga |
100 |
Q |
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| T |
12104349 |
gtttcttgatccttgccaagcaattgtccattggccttgtgtgtggcaagaatctcactggagattttgggttgatttgttccaacctgtgaaagcaaga |
12104448 |
T |
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| Q |
101 |
cacaacattaacattagtatcttttgatcaattttaatattggaatgatgtatactttgcttcaataatatattgtgtgtgagnnnnnnnttcatgtgag |
200 |
Q |
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| T |
12104449 |
cacaacattaacattagtaccttttgatcaattttaatattggaatgatgtatactttgcttcaataatatattgtgtgtgagaaaaaaattcatgtgag |
12104548 |
T |
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| Q |
201 |
tagtaaaaagagggagaaaaatatttactcatagttgaggagaaagtggtgaaggaaaactgagatttccagcttagcaagatcatttccagggcacaat |
300 |
Q |
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| T |
12104549 |
tagtaaaaagagggagaaaaatatttactcatagttgaggagaaagtggtgaaggaaaactgagatttccagcttagcaagatcatttccagggcacaat |
12104648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 12112951 - 12113004
Alignment:
| Q |
2 |
tttcttgatccttgccaagcaattgtccattggccttgtgtgtggcaagaatct |
55 |
Q |
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| T |
12112951 |
tttcttgacccttcctaagcaattgtccattggccttgtatgtggtaagtatct |
12113004 |
T |
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