View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9009_low_3 (Length: 679)

Name: NF9009_low_3
Description: NF9009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9009_low_3
NF9009_low_3
[»] chr3 (6 HSPs)
chr3 (15-663)||(7948694-7949331)
chr3 (332-393)||(27513655-27513716)
chr3 (345-398)||(41319316-41319368)
chr3 (344-398)||(13799505-13799558)
chr3 (356-401)||(34409359-34409403)
chr3 (356-400)||(12704674-12704717)
[»] chr5 (9 HSPs)
chr5 (332-407)||(38749556-38749630)
chr5 (343-398)||(38866454-38866510)
chr5 (359-399)||(4014795-4014835)
chr5 (356-407)||(43208291-43208341)
chr5 (328-378)||(18592093-18592143)
chr5 (332-378)||(41558647-41558693)
chr5 (356-396)||(11596472-11596511)
chr5 (358-398)||(28296329-28296368)
chr5 (346-398)||(32630742-32630793)
[»] chr2 (6 HSPs)
chr2 (346-401)||(18570970-18571024)
chr2 (356-408)||(7803433-7803484)
chr2 (335-383)||(28341865-28341913)
chr2 (354-398)||(40681983-40682026)
chr2 (333-379)||(12668417-12668463)
chr2 (346-398)||(37402091-37402143)
[»] chr7 (8 HSPs)
chr7 (344-398)||(38134411-38134464)
chr7 (341-398)||(1334899-1334956)
chr7 (333-398)||(32308121-32308185)
chr7 (356-393)||(36013815-36013852)
chr7 (266-398)||(2525770-2525902)
chr7 (345-378)||(19930947-19930980)
chr7 (287-339)||(21138955-21139007)
chr7 (357-385)||(32115414-32115442)
[»] chr4 (6 HSPs)
chr4 (332-398)||(18513234-18513299)
chr4 (343-398)||(14465298-14465352)
chr4 (355-410)||(44796978-44797032)
chr4 (356-410)||(5654608-5654661)
chr4 (328-398)||(35723373-35723443)
chr4 (344-407)||(56049869-56049930)
[»] chr6 (3 HSPs)
chr6 (343-400)||(30866148-30866204)
chr6 (332-378)||(9024169-9024215)
chr6 (338-396)||(9617437-9617494)
[»] chr1 (6 HSPs)
chr1 (335-400)||(6427349-6427413)
chr1 (332-401)||(26777370-26777439)
chr1 (256-307)||(38078594-38078645)
chr1 (356-401)||(24176817-24176862)
chr1 (339-407)||(19637760-19637827)
chr1 (346-398)||(40747780-40747831)
[»] scaffold0022 (1 HSPs)
scaffold0022 (335-407)||(99885-99956)
[»] scaffold0004 (1 HSPs)
scaffold0004 (346-401)||(100997-101052)
[»] chr8 (4 HSPs)
chr8 (339-398)||(10002163-10002222)
chr8 (278-398)||(44067517-44067631)
chr8 (256-393)||(28819197-28819328)
chr8 (345-381)||(14229557-14229593)
[»] scaffold0316 (1 HSPs)
scaffold0316 (266-312)||(16215-16261)


Alignment Details
Target: chr3 (Bit Score: 567; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 15 - 663
Target Start/End: Complemental strand, 7949331 - 7948694
Alignment:
Q  15 gacatcaaggagagctctcaagggcttcaacccaaaagagttcaagtctaaccgatgttttagaatcgaaccggacatagaactggcgaaacctcagggt 114  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7949331 gacaccaaggagagctctcaagggcttcaacctaaaagagttcaagtctaaccgatgttttagaatcgaaccggacatagaactggcgaaacctcagggt 7949232  T
Q  115 tatggttcaaccgcttcaaaccaccaccaaactgctcgaataactgaaccatatatagtgccggctaatggttcaaccgttgggttcagttagattttta 214  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7949231 tatggttcaaccgcttcaaaccaccaccaaacttctcgaataactgaaccatatatagtgccggctaatggttcaaccgtcgggttcagttagattttta 7949132  T
Q  215 aaacattgattctaacatctttccaagatgacatggtatggttataatctgtgaagcacaaatactcatcgtattaggcgtgtcctggtgttggatacaa 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7949131 aaacattgattctaacatctttccaagatgacatggtatggttataatctctgaagcacaaatactcatcgtattaggtgtgtcctggtgttggatacaa 7949032  T
Q  315 atcatgtccgacacgactccgacacgactccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgttgatatgtctgtccgt 414  Q
    ||||||||||||||||||| |||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7949031 atcatgtccgacacgactctgacac-----------atacaattacattgaattatgtcatttttctcaaactattatcggtgttgatatgtctgtccgt 7948943  T
Q  415 ttcatgtccatatccgagtcattgtttcataggttgtaattcataacaacaccacacaagtgaaacagttcttatagagaacacaaaaatgttaaatcta 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  7948942 ttcatgtccatatccgagtcattgtttcataggttgtaattcataacaacaccacacaagtgaaacaattcttatagagaacataaaaatgttaaatcta 7948843  T
Q  515 ataacagaatcagttaattctgtttatttagttacattttctgtttgttccatttccatatataaatctttgaatcattcacaaatcaattaatgaattc 614  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7948842 ataacagaatcagttaattctgtttatttagttacattttctgtttgttccatttccatatataaatctttgaatcattcacaaatcaatcaatgaattc 7948743  T
Q  615 attcattatttcttcactcttcacatcataatacaataagataacaaag 663  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7948742 attcattatttcttcacttttcacatcataatacaataagataacaaag 7948694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 332 - 393
Target Start/End: Original strand, 27513655 - 27513716
Alignment:
Q  332 tccgacacgactccgacacatacaattacattgaattatgtcatttttctcaaactattatc 393  Q
    ||||||| ||| ||||||||||  |||||||||||| ||||||||||||||||| |||||||    
T  27513655 tccgacaagacaccgacacatatgattacattgaataatgtcatttttctcaaattattatc 27513716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 345 - 398
Target Start/End: Original strand, 41319316 - 41319368
Alignment:
Q  345 cgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgt 398  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||| |||||    
T  41319316 cgacacatacaattacattgaattatgtcattttt-tcaaattattattggtgt 41319368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 344 - 398
Target Start/End: Complemental strand, 13799558 - 13799505
Alignment:
Q  344 ccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgt 398  Q
    ||||||||||  |||||| | |||||||||||||| |||||||||||||||||||    
T  13799558 ccgacacatattattacacttaattatgtcatttt-ctcaaactattatcggtgt 13799505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 401
Target Start/End: Original strand, 34409359 - 34409403
Alignment:
Q  356 attacattgaattatgtcatttttctcaaactattatcggtgttga 401  Q
    ||||||||||||||||||| ||||||| || |||||||||||||||    
T  34409359 attacattgaattatgtca-ttttctcgaagtattatcggtgttga 34409403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 356 - 400
Target Start/End: Original strand, 12704674 - 12704717
Alignment:
Q  356 attacattgaattatgtcatttttctcaaactattatcggtgttg 400  Q
    |||||||||||||||||||||||| ||||| ||||||| ||||||    
T  12704674 attacattgaattatgtcattttt-tcaaattattatccgtgttg 12704717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 332 - 407
Target Start/End: Original strand, 38749556 - 38749630
Alignment:
Q  332 tccgacacgactccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgttgatatgtc 407  Q
    |||||||| || || ||||||| ||||||||||||||||||||||||| ||||| |||||||||||| || |||||    
T  38749556 tccgacacaacaccaacacatataattacattgaattatgtcattttt-tcaaattattatcggtgtcgacatgtc 38749630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 343 - 398
Target Start/End: Complemental strand, 38866510 - 38866454
Alignment:
Q  343 tccgacacatacaa-ttacattgaattatgtcatttttctcaaactattatcggtgt 398  Q
    ||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||    
T  38866510 tccgacacatataaattacattgaattatgtcatttttttcaaaatattatcggtgt 38866454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 359 - 399
Target Start/End: Original strand, 4014795 - 4014835
Alignment:
Q  359 acattgaattatgtcatttttctcaaactattatcggtgtt 399  Q
    |||||||||||||||||||||||||||  ||||||||||||    
T  4014795 acattgaattatgtcatttttctcaaatcattatcggtgtt 4014835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 407
Target Start/End: Original strand, 43208291 - 43208341
Alignment:
Q  356 attacattgaattatgtcatttttctcaaactattatcggtgttgatatgtc 407  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||| ||||    
T  43208291 attacattgaattatgtca-ttttctcaaattactatcggtgttgatgtgtc 43208341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 328 - 378
Target Start/End: Complemental strand, 18592143 - 18592093
Alignment:
Q  328 cgactccgacacgactccgacacatacaattacattgaattatgtcatttt 378  Q
    |||| |||||||||| ||| |||||| |||||||||||||||||| |||||    
T  18592143 cgacaccgacacgacaccggcacatataattacattgaattatgtaatttt 18592093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 332 - 378
Target Start/End: Original strand, 41558647 - 41558693
Alignment:
Q  332 tccgacacgactccgacacatacaattacattgaattatgtcatttt 378  Q
    ||||||||||| | |||||||  ||||||||||||||||||||||||    
T  41558647 tccgacacgacactgacacatttaattacattgaattatgtcatttt 41558693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 356 - 396
Target Start/End: Original strand, 11596472 - 11596511
Alignment:
Q  356 attacattgaattatgtcatttttctcaaactattatcggt 396  Q
    ||||||||||||||||||| |||||||||| ||||||||||    
T  11596472 attacattgaattatgtca-ttttctcaaattattatcggt 11596511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 358 - 398
Target Start/End: Complemental strand, 28296368 - 28296329
Alignment:
Q  358 tacattgaattatgtcatttttctcaaactattatcggtgt 398  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  28296368 tacattgaattatgtca-ttttctcaaattattatcggtgt 28296329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 346 - 398
Target Start/End: Original strand, 32630742 - 32630793
Alignment:
Q  346 gacacatacaattacattgaattatgtcatttttctcaaactattatcggtgt 398  Q
    |||||||| |||||||||||||||| | | |||||||||| ||||||||||||    
T  32630742 gacacatataattacattgaattatat-aattttctcaaattattatcggtgt 32630793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 346 - 401
Target Start/End: Complemental strand, 18571024 - 18570970
Alignment:
Q  346 gacacatacaattacattgaattatgtcatttttctcaaactattatcggtgttga 401  Q
    ||||||||  ||||||||||||||||||| |||||||||| |||||||||||||||    
T  18571024 gacacatatgattacattgaattatgtca-ttttctcaaattattatcggtgttga 18570970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 7803433 - 7803484
Alignment:
Q  356 attacattgaattatgtcatttttctcaaactattatcggtgttgatatgtct 408  Q
    |||| ||||||||||||||| ||| |||||||||||||||||||| |||||||    
T  7803433 attatattgaattatgtcatcttt-tcaaactattatcggtgttggtatgtct 7803484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 335 - 383
Target Start/End: Original strand, 28341865 - 28341913
Alignment:
Q  335 gacacgactccgacacatacaattacattgaattatgtcatttttctca 383  Q
    |||||||| ||||||  || |||||||||||||||||||||||||||||    
T  28341865 gacacgacaccgacatctataattacattgaattatgtcatttttctca 28341913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 40682026 - 40681983
Alignment:
Q  354 caattacattgaattatgtcatttttctcaaactattatcggtgt 398  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||    
T  40682026 caattacattgaattatgtca-ttttctcaaattattatcggtgt 40681983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 333 - 379
Target Start/End: Original strand, 12668417 - 12668463
Alignment:
Q  333 ccgacacgactccgacacatacaattacattgaattatgtcattttt 379  Q
    |||||||||| ||||||| || ||||||| |||||||||||||||||    
T  12668417 ccgacacgacaccgacacttataattacactgaattatgtcattttt 12668463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 346 - 398
Target Start/End: Original strand, 37402091 - 37402143
Alignment:
Q  346 gacacatacaattacattgaattatgtcatttttctcaaactattatcggtgt 398  Q
    ||||||||  |||||||||||||||||||||||| | ||| ||| ||||||||    
T  37402091 gacacatatgattacattgaattatgtcattttttttaaattataatcggtgt 37402143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 344 - 398
Target Start/End: Original strand, 38134411 - 38134464
Alignment:
Q  344 ccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgt 398  Q
    ||||||||||  ||||||||||||||||||| |||||||||| ||||||||||||    
T  38134411 ccgacacatatgattacattgaattatgtca-ttttctcaaattattatcggtgt 38134464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 398
Target Start/End: Original strand, 1334899 - 1334956
Alignment:
Q  341 actccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgt 398  Q
    ||||| ||||||| || |||||||||||||||||||||| ||||| |||||| |||||    
T  1334899 actccaacacatataaatacattgaattatgtcatttttttcaaattattattggtgt 1334956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 333 - 398
Target Start/End: Complemental strand, 32308185 - 32308121
Alignment:
Q  333 ccgacacgactccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgt 398  Q
    |||||||||| | |||||||||||||||| |||||||||| | |||||||||| ||||| ||||||    
T  32308185 ccgacacgacactgacacatacaattacactgaattatgtga-ttttctcaaattattagcggtgt 32308121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 36013815 - 36013852
Alignment:
Q  356 attacattgaattatgtcatttttctcaaactattatc 393  Q
    |||||||||||||||||||||||||||||| |||||||    
T  36013815 attacattgaattatgtcatttttctcaaattattatc 36013852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 398
Target Start/End: Original strand, 2525770 - 2525902
Alignment:
Q  266 tgaagcacaaatactcatcgtattaggcgtgtcctggtgttggatacaaatcatgtccgacac-gactccgacac-gactccgacacatacaattacatt 363  Q
    |||| |||| |||||| ||| ||||||| ||||||| ||| || |||  ||| ||||| |||| ||| ||||||| ||| ||||||||||  |||| |||    
T  2525770 tgaaccacatatactcctcggattaggcatgtcctgatgtcggttacttatcgtgtccaacaccgac-ccgacaccgacaccgacacatatgattatatt 2525868  T
Q  364 gaattatgtcatttttctcaaactattatcggtgt 398  Q
    ||||||||||| ||| |||||| ||||||||||||    
T  2525869 gaattatgtca-tttgctcaaattattatcggtgt 2525902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 378
Target Start/End: Original strand, 19930947 - 19930980
Alignment:
Q  345 cgacacatacaattacattgaattatgtcatttt 378  Q
    ||||||||| ||||||||||||||||||||||||    
T  19930947 cgacacatataattacattgaattatgtcatttt 19930980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 21138955 - 21139007
Alignment:
Q  287 attaggcgtgtcctggtgttggatacaaatcatgtccgacacgactccgacac 339  Q
    |||| |||||||||||||| ||| ||  ||||||||||||||||| |||||||    
T  21138955 attaagcgtgtcctggtgtcggacacgtatcatgtccgacacgacaccgacac 21139007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 32115414 - 32115442
Alignment:
Q  357 ttacattgaattatgtcatttttctcaaa 385  Q
    |||||||||||||||||||||||||||||    
T  32115414 ttacattgaattatgtcatttttctcaaa 32115442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 332 - 398
Target Start/End: Original strand, 18513234 - 18513299
Alignment:
Q  332 tccgacacgactccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgt 398  Q
    |||||||| || | ||||||||  ||||||||||||||||||| |||||||||| ||||||||||||    
T  18513234 tccgacacaacactgacacatatgattacattgaattatgtca-ttttctcaaattattatcggtgt 18513299  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 343 - 398
Target Start/End: Original strand, 14465298 - 14465352
Alignment:
Q  343 tccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgt 398  Q
    |||||||||||  |||| |||||||||||||| |||||||||| ||||||||||||    
T  14465298 tccgacacatatgattaaattgaattatgtca-ttttctcaaattattatcggtgt 14465352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 410
Target Start/End: Original strand, 44796978 - 44797032
Alignment:
Q  355 aattacattgaattatgtcatttttctcaaactattatcggtgttgatatgtctgt 410  Q
    |||||||||||||||||| | |||||||||| |||| |||||||||| ||||||||    
T  44796978 aattacattgaattatgtta-ttttctcaaattattgtcggtgttgacatgtctgt 44797032  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 356 - 410
Target Start/End: Original strand, 5654608 - 5654661
Alignment:
Q  356 attacattgaattatgtcatttttctcaaactattatcggtgttgatatgtctgt 410  Q
    ||||||||||||||||||| |||||||||| ||||||| |||| || ||||||||    
T  5654608 attacattgaattatgtca-ttttctcaaattattatcagtgtcgacatgtctgt 5654661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 328 - 398
Target Start/End: Original strand, 35723373 - 35723443
Alignment:
Q  328 cgactccgacacgactccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgt 398  Q
    |||| |||| ||||| | |||||||| ||||||||||||||||||   |||||||||| ||||| ||||||    
T  35723373 cgacaccgatacgacactgacacatataattacattgaattatgtgtattttctcaaattattagcggtgt 35723443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 344 - 407
Target Start/End: Complemental strand, 56049930 - 56049869
Alignment:
Q  344 ccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgttgatatgtc 407  Q
    ||||||||||  ||||||||||| |||||||  ||||||||| |||||||||||| ||| ||||    
T  56049930 ccgacacatatgattacattgaactatgtca--tttctcaaattattatcggtgtcgatgtgtc 56049869  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 400
Target Start/End: Original strand, 30866148 - 30866204
Alignment:
Q  343 tccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgttg 400  Q
    ||||||||||| |||||||||||||||||| | |||||||||| ||||| ||||||||    
T  30866148 tccgacacatataattacattgaattatgtga-ttttctcaaattattagcggtgttg 30866204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 332 - 378
Target Start/End: Original strand, 9024169 - 9024215
Alignment:
Q  332 tccgacacgactccgacacatacaattacattgaattatgtcatttt 378  Q
    ||||||||||| | ||||||||  |||||||||||||||||||||||    
T  9024169 tccgacacgacactgacacatatgattacattgaattatgtcatttt 9024215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 338 - 396
Target Start/End: Complemental strand, 9617494 - 9617437
Alignment:
Q  338 acgactccgacacatacaattacattgaattatgtcatttttctcaaactattatcggt 396  Q
    ||||| |||||||||| |||||||||||||||||| | |||||||||| ||||| ||||    
T  9617494 acgacaccgacacatataattacattgaattatgtga-ttttctcaaattattaccggt 9617437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 335 - 400
Target Start/End: Complemental strand, 6427413 - 6427349
Alignment:
Q  335 gacacgactccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgttg 400  Q
    |||||||| || ||||||| |||||||||||||||||| | |||||||||| ||||| ||||||||    
T  6427413 gacacgacaccaacacatataattacattgaattatgtga-ttttctcaaattattagcggtgttg 6427349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 332 - 401
Target Start/End: Original strand, 26777370 - 26777439
Alignment:
Q  332 tccgacacgactccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgttga 401  Q
    ||||||||||| || ||||||   |||||||| ||||| ||||||||| ||||| |||||||||||||||    
T  26777370 tccgacacgacacccacacatgtgattacattcaattaagtcatttttttcaaattattatcggtgttga 26777439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 307
Target Start/End: Original strand, 38078594 - 38078645
Alignment:
Q  256 ttataatctgtgaagcacaaatactcatcgtattaggcgtgtcctggtgttg 307  Q
    ||||| ||| |||||||| ||||||| ||| |||||||||||||||||||||    
T  38078594 ttatattctatgaagcacgaatactcctcggattaggcgtgtcctggtgttg 38078645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 401
Target Start/End: Complemental strand, 24176862 - 24176817
Alignment:
Q  356 attacattgaattatgtcatttttctcaaactattatcggtgttga 401  Q
    |||||||| ||| ||||||||||||||||| | |||||||||||||    
T  24176862 attacattaaatcatgtcatttttctcaaaattttatcggtgttga 24176817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 339 - 407
Target Start/End: Complemental strand, 19637827 - 19637760
Alignment:
Q  339 cgactccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgttgatatgtc 407  Q
    |||| ||||||||||  |||||||||||| |||||| |||||| ||| |||||||||||| ||| ||||    
T  19637827 cgacaccgacacatatgattacattgaataatgtca-ttttcttaaattattatcggtgtcgatgtgtc 19637760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 346 - 398
Target Start/End: Original strand, 40747780 - 40747831
Alignment:
Q  346 gacacatacaattacattgaattatgtcatttttctcaaactattatcggtgt 398  Q
    ||||| || |||||||||||||||||||| |||||||||| ||||||| ||||    
T  40747780 gacacctataattacattgaattatgtca-ttttctcaaattattatccgtgt 40747831  T

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Target: scaffold0022 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 335 - 407
Target Start/End: Complemental strand, 99956 - 99885
Alignment:
Q  335 gacacgactccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgttgatatgtc 407  Q
    |||||||| || ||||||| |||||||||||||||||| | |||||| ||| |||||||||||| || |||||    
T  99956 gacacgacaccaacacatataattacattgaattatgtta-ttttctaaaattattatcggtgtcgacatgtc 99885  T

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Target: scaffold0004 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 346 - 401
Target Start/End: Complemental strand, 101052 - 100997
Alignment:
Q  346 gacacatacaattacattgaattatgtcatttttctcaaactattatcggtgttga 401  Q
    |||||||| |||||||||||||||||||||||||   ||| ||| |||||||||||    
T  101052 gacacatataattacattgaattatgtcattttttaaaaaatatcatcggtgttga 100997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 339 - 398
Target Start/End: Original strand, 10002163 - 10002222
Alignment:
Q  339 cgactccgacacatacaattacattgaattatgtcatttttctcaaactattatcggtgt 398  Q
    |||| |||||||||   |||||||| ||||||||||||||| ||||| ||||||||||||    
T  10002163 cgacaccgacacatgtgattacattaaattatgtcatttttttcaaattattatcggtgt 10002222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 278 - 398
Target Start/End: Complemental strand, 44067631 - 44067517
Alignment:
Q  278 actcatcgtattaggcgtgtcctggtgttggatacaaatca-tgtccgacacgactccgacacgactccgacacatacaattacattgaattatgtcatt 376  Q
    |||| ||| ||||||||||||||||||| ||| ||  |||| ||||||||||||| ||||||      |||||| || ||||||| || ||||||||| |    
T  44067631 actcctcgaattaggcgtgtcctggtgtcggacacgcatcagtgtccgacacgacaccgaca------cgacacttataattacactgtattatgtca-t 44067539  T
Q  377 tttctcaaactattatcggtgt 398  Q
    ||||||||| ||||||| ||||    
T  44067538 tttctcaaattattatccgtgt 44067517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 393
Target Start/End: Complemental strand, 28819328 - 28819197
Alignment:
Q  256 ttataatctgtgaagcacaaatactcatcgtattaggcgtgtcctggtgttggatacaaatcatgtccgacacgactccgacacgactccgacacataca 355  Q
    |||| |||| ||||||||| |||||| ||| ||||| ||||| | ||||||||||||| ||| |||| ||||     ||||||| |  ||||||||||      
T  28819328 ttatgatctatgaagcacatatactcctcggattagccgtgttccggtgttggatacatatcgtgtctgaca-----ccgacacaaaaccgacacatatg 28819234  T
Q  356 attacattgaattatgtcatttttctcaaactattatc 393  Q
    ||| |||||| ||||| || |||||||||| |||||||    
T  28819233 attgcattgagttatgcca-ttttctcaaattattatc 28819197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 345 - 381
Target Start/End: Complemental strand, 14229593 - 14229557
Alignment:
Q  345 cgacacatacaattacattgaattatgtcatttttct 381  Q
    |||||||| | ||||||||||||||||||||||||||    
T  14229593 cgacacatgcgattacattgaattatgtcatttttct 14229557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 312
Target Start/End: Complemental strand, 16261 - 16215
Alignment:
Q  266 tgaagcacaaatactcatcgtattaggcgtgtcctggtgttggatac 312  Q
    ||||||||||||||| |||| ||||| ||||||| ||||||||||||    
T  16261 tgaagcacaaatactaatcggattagacgtgtcccggtgttggatac 16215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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