View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9009_low_32 (Length: 287)
Name: NF9009_low_32
Description: NF9009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9009_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 56392990 - 56393245
Alignment:
| Q |
13 |
cagagaaaaaattagtaaatacatgacgctcacaagtcatatggtcagtagcccctgtatcgattatccaatctctactcctagtaacaacaaaaagatt |
112 |
Q |
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| T |
56392990 |
cagagaaaaaattagtaaatacatgacgttcacaagtcatatggtcagtagcccctgtatcgattatccaatctctacccctagtaacaacagaaagatt |
56393089 |
T |
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| Q |
113 |
aagaggagagttagatatacctgacttggttacaaatcctgcagccgtataattattttcttccttattgctagaattattttttccttttggatgccaa |
212 |
Q |
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| T |
56393090 |
aagagcagagttagatatacctgacttggttacgaatcctgcagccgtagaattattttctgccttattgctggaattattttttccttttggatgccaa |
56393189 |
T |
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| Q |
213 |
tctggatatccatggagtttaaaacatgcttcgactacatgattatcaccattaca |
268 |
Q |
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| T |
56393190 |
tctggatatccatggagtttaaaacatgcttccactacatgattatcaccattaca |
56393245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 268
Target Start/End: Original strand, 27517223 - 27517483
Alignment:
| Q |
8 |
agaagcagagaaaaaattagtaaatacatgacgctcacaagtcatatggtcagtagcccctgtatcgattatccaatctctactcctagtaacaacaaaa |
107 |
Q |
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|||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
27517223 |
agaaccagaggaaaaattagtaaatacatgacgttcacaagtcatatggtcagtagcccctgtatcgattatccaatctctacccctagtaacaacagaa |
27517322 |
T |
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| Q |
108 |
agattaagaggagagttagatatacctgacttggttacaaatcctgcagccgtataattattttcttccttattgctagaattattttttccttttggat |
207 |
Q |
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| T |
27517323 |
agattaagagcagagttagatatacctgacttggttacgaatcctgcagccgtagaattattttctgccttattgatggaattattttttccttttggat |
27517422 |
T |
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| Q |
208 |
gccaatctggatatccatggagtttaaaacatgcttcgactacatgattatcaccattaca |
268 |
Q |
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| T |
27517423 |
gccaatctggatatccatggagtttaaaacatgcttcaactacatgattatcaccattaca |
27517483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 40456939 - 40457200
Alignment:
| Q |
19 |
aaaaattagtaaatacatgacgctcacaagtcatatggtcagtagcccctgtatcgattatccaatctctactcctagtaacaacaaaaagattaagagg |
118 |
Q |
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||||||||||||||| || | |||||||||||||| |||| ||| |||||||| ||||||||||| ||| | ||||||||||| ||||||||| || |
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| T |
40456939 |
aaaaattagtaaatatgtgtggatcacaagtcatatgatcagaagcacctgtatcaattatccaatcactatccttagtaacaacagaaagattaatagc |
40457038 |
T |
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| Q |
119 |
agagttagatatacctgacttggttacaaatcctgcagccgta------------taattattttcttccttattgctagaattattttttccttttgga |
206 |
Q |
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||||||||||||||||||||| ||| |||| || ||||| ||| | | ||||||||||||| || | ||| || ||| |||||||| |
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| T |
40457039 |
agagttagatatacctgactttgttgcaaaaccagcagcagtagaaacatggcccttaatattttcttccttgttattggaagtagatttgccttttggg |
40457138 |
T |
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| Q |
207 |
tgccaatctggatatccatggagtttaaaacatgcttcgactacatgattatcaccattaca |
268 |
Q |
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|||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
40457139 |
tgccaatctggataaccatggagtttaaaacatgtttccttgacatgattatcaccattaca |
40457200 |
T |
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