View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9009_low_34 (Length: 250)
Name: NF9009_low_34
Description: NF9009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9009_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 44642623 - 44642832
Alignment:
| Q |
17 |
gcaagaagtagagtcttcagattagcacaatcaatctcaccagtaaccaatgtgctaactttcatgcatttcattctatacattcttgctatcttgaata |
116 |
Q |
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| T |
44642623 |
gcaagaagtagagtcttcagattagcacaatcaatctcaccagtaaccaatgtgctaactttcatgcatttcattctatacattcttgctatcttgaata |
44642722 |
T |
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| Q |
117 |
ttgaataatgtgagtcttgtgaagtatatataatcccatctgaaaacttttcccttctgtatatgataaacacaaattaatactacatcatatatatttg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44642723 |
ttgaataatgtgagtcttgtgaagtatatataatcccatctgaaaacttttcccttctgtatatgataaacacaaattaatactacatcatatatatttg |
44642822 |
T |
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| Q |
217 |
taagtaataa |
226 |
Q |
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|||||||||| |
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| T |
44642823 |
taagtaataa |
44642832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 44669288 - 44669449
Alignment:
| Q |
16 |
agcaagaagtagagtcttcagattagcacaatcaatctcaccagtaaccaatgtgctaactttcatgcatttcattctatacattcttgctatcttgaat |
115 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||||| | | |||||||| |||||| ||||||| ||||||||| |||||||||||||||||| |
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| T |
44669288 |
agcaagaagtagagtctttagatcagcacaatcaatctcaccattgatcaatgtgccaacttttatgcattgcattctatatattcttgctatcttgaat |
44669387 |
T |
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| Q |
116 |
attgaataatgtgagtcttgtgaagtatatataatcccatctgaaaacttttcccttctgta |
177 |
Q |
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| T |
44669388 |
attgaataatgtgaatcttgtgaggtatacaaaatcccatctggaaatttctcccttctgta |
44669449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 179
Target Start/End: Original strand, 44684347 - 44684438
Alignment:
| Q |
88 |
cattctatacattcttgctatcttgaatattgaataatgtgagtcttgtgaagtatatataatcccatctgaaaacttttcccttctgtata |
179 |
Q |
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| T |
44684347 |
cattctatacattcttgctattttgaatattgaataatgtgactcttgtgaagtatatagaatcccatctggaaattgttctctcctgtata |
44684438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 44661244 - 44661316
Alignment:
| Q |
86 |
ttcattctatacattcttgctatcttgaatattgaataatgtgagtcttgtgaagtatatataatcccatctg |
158 |
Q |
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| T |
44661244 |
ttcattcgatacatttttgctattttcgctattgaataatgtgaatcttgcgaggtatatagaattccatctg |
44661316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 29340452 - 29340377
Alignment:
| Q |
83 |
catttcattctatacattcttgctatcttgaatattgaataatgtgagtcttgtgaagtatatataatcccatctg |
158 |
Q |
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| T |
29340452 |
cattgcattcgatacattcttgcaattttgaatatcgaataatgtgaatcttgtgaggtatatagaattccatctg |
29340377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 29353407 - 29353332
Alignment:
| Q |
83 |
catttcattctatacattcttgctatcttgaatattgaataatgtgagtcttgtgaagtatatataatcccatctg |
158 |
Q |
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|||| ||||| |||||||||||| || |||||||| ||||||||||| |||||||| ||||||| ||| ||||||| |
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| T |
29353407 |
cattgcattcgatacattcttgcaattttgaatatcgaataatgtgaatcttgtgaggtatatagaattccatctg |
29353332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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