View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9009_low_37 (Length: 239)
Name: NF9009_low_37
Description: NF9009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9009_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 49 - 224
Target Start/End: Complemental strand, 31293695 - 31293521
Alignment:
| Q |
49 |
gtctcatccttaatctgcaccaatctacaattgaaaacaccataatttcattcgacataaggtaccattccatgacattcaatttcaaaatttaacacca |
148 |
Q |
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| T |
31293695 |
gtctcatccttaatctgcaccaatctacaattgaaaacaccataatttcattcgacataaggtaccattccatgacattcaatttcaaaatttaacacca |
31293596 |
T |
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| Q |
149 |
gttttgatcacataattcttaacaagaacaaaaacaaagcaaaaacaatgcatcatcctcaaccagccatcaatct |
224 |
Q |
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| T |
31293595 |
gttttgatcacataattcttaacaagaacaaaaacaaagcaaaaacaatgcatcatcctcaaccag-catcaatct |
31293521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 209
Target Start/End: Complemental strand, 31293467 - 31293377
Alignment:
| Q |
117 |
tccatgacattcaatttcaaaatttaacaccagttttgatcacataattcttaacaagaacaaaaacaaagcaaaaacaatgcatcatcctca |
209 |
Q |
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| T |
31293467 |
tccatgacattaaatttcaaaa-ttgacaccaattttgatcaaatgtttcccaacaacaacaaaaacaaaacaagaa-attgcatcatcctca |
31293377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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