View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9009_low_41 (Length: 229)
Name: NF9009_low_41
Description: NF9009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9009_low_41 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 15580754 - 15580529
Alignment:
| Q |
3 |
acagtgaagcttgaactagcaagccagccatgccatttcttcagagtcttgttgtatgcatccgtacaggcttgtgacattggccagtcatcatgctcaa |
102 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15580754 |
acagtgaagcttgaactagcaagccatccatgccatttcttcagagtcttgttgtatgcatccgtacaggcttgtgacattggccagtcatcatgctcaa |
15580655 |
T |
|
| Q |
103 |
tcaagttttggaacaaagccaccaagaaatccattgctctgaagattttcaggttgggaaaattaaattatcataagtaatattgagtgaacgattaata |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15580654 |
tcaagttttggaacaaagccaccaagaaatccattgctctgaagattttcaggtt-ggaaaattaaattatcataactaatattgagtgaacgattaata |
15580556 |
T |
|
| Q |
203 |
ataactaataataagctaagttcttgc |
229 |
Q |
| |
|
||||||||||| ||||||||||||||| |
|
|
| T |
15580555 |
ataactaataacaagctaagttcttgc |
15580529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 3 - 151
Target Start/End: Original strand, 33544129 - 33544277
Alignment:
| Q |
3 |
acagtgaagcttgaactagcaagccagccatgccatttcttcagagtcttgttgtatgcatccgtacaggcttgtgacattggccagtcatcatgctcaa |
102 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||| ||||||||||| || | ||| ||||||||||||||||||| ||| || ||||||||| |
|
|
| T |
33544129 |
acagtgaaacttgaactagcaagccagccatgccacttctttagagtcttgttataggaatcagtacaggcttgtgacattgaccaatccgcatgctcaa |
33544228 |
T |
|
| Q |
103 |
tcaagttttggaacaaagccaccaagaaatccattgctctgaagatttt |
151 |
Q |
| |
|
| |||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33544229 |
ttaagtttcggaacagtgccaccaagaaatccattgctctgaagatttt |
33544277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 151
Target Start/End: Original strand, 33539503 - 33539651
Alignment:
| Q |
3 |
acagtgaagcttgaactagcaagccagccatgccatttcttcagagtcttgttgtatgcatccgtacaggcttgtgacattggccagtcatcatgctcaa |
102 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||| ||||| |||||||||| || | ||| ||||||||||||||||||| ||| || ||||||||| |
|
|
| T |
33539503 |
acagtgacggttgaactagcaagccagccatgccacttctttagagtcttgtaataggaatcagtacaggcttgtgacattgaccaatctgcatgctcaa |
33539602 |
T |
|
| Q |
103 |
tcaagttttggaacaaagccaccaagaaatccattgctctgaagatttt |
151 |
Q |
| |
|
| |||||| |||||| ||||||||||||||||| |||||| ||||||| |
|
|
| T |
33539603 |
ttaagtttcggaacactgccaccaagaaatccatagctctgcagatttt |
33539651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University