View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9009_low_42 (Length: 218)
Name: NF9009_low_42
Description: NF9009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9009_low_42 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 1695546 - 1695346
Alignment:
| Q |
18 |
aacaagacaataaagttgcaaataatttcatattattgaacgatgcaaataaagaaataacataagaatataggaaagtgagaaacttacaccaagcgct |
117 |
Q |
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| T |
1695546 |
aacaagacaataaagttgcaaataatttcatattattgaacgatgcaaataaagaattaacataagaatataggaaagtgagaaacttacactaaacgct |
1695447 |
T |
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| Q |
118 |
cagttttcaggcggctagcatttttcatttttgataaacgattgattgtagcatttggatgtaatgcaactaaagatgttggtgcagtcatgtcatggtc |
217 |
Q |
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| T |
1695446 |
cagttttcaggcggctagcatttttcatttttgataaacgattgattgtagcatttggatgtaatgcaactaaagatgttggtgcagtcatgtcatggtc |
1695347 |
T |
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| Q |
218 |
a |
218 |
Q |
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| T |
1695346 |
a |
1695346 |
T |
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Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 74 - 194
Target Start/End: Complemental strand, 41921403 - 41921283
Alignment:
| Q |
74 |
ataacataagaatataggaaagtgagaaacttacaccaagcgctcagttttcaggcggctagcatttttcatttttgataaacgattgattgtagcattt |
173 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||| || || ||||||||||| |
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| T |
41921403 |
ataacataagaatataggaaagtgagaaacttacactgtgcgctcagttttcaagcgactagcatttttcatttttgataaatgactgtttgtagcattt |
41921304 |
T |
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| Q |
174 |
ggatgtaatgcaactaaagat |
194 |
Q |
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| T |
41921303 |
ggatgaaatgcaactaaagat |
41921283 |
T |
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