View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9009_low_7 (Length: 600)
Name: NF9009_low_7
Description: NF9009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9009_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 13 - 587
Target Start/End: Complemental strand, 24336570 - 24335996
Alignment:
| Q |
13 |
ttattctaactgaaagatcatcatcaagaccaagattaaacacttttttcggtgttgttttaccttgaactgcaccatacttagaagttttgttattaaa |
112 |
Q |
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| T |
24336570 |
ttattcttactgaaagatcatcatcaagaccaagattaaacacttttttcggcgttgttttaccttgaactgcaccatacttagaagttttgttattaaa |
24336471 |
T |
|
| Q |
113 |
actgattccacttgcatggtcatttatatcaacagaattcttatcagaacaagaacatttgagacgaagactcgatagaacactcttagcatgctctttt |
212 |
Q |
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| T |
24336470 |
actgatttcacttgcatggtcatttatatcaacagaattcttatcagaacaagagcatttgagacgaagactcgatagaacactcttagcatgctctttt |
24336371 |
T |
|
| Q |
213 |
tctttgctattccctatagaatttctcactccactcttcaagagtgcattttggctgttccatgttgacacagaactaatacttggagttccatactcaa |
312 |
Q |
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| T |
24336370 |
tctttgctattccctatagaatttctcactccactcttcaagagtgcattttggctgttccatgttgacacagagctaatacttggagttccatactcaa |
24336271 |
T |
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| Q |
313 |
cttggtactttctagtttctatagccattgtttcctttctctgaggaaggtactttgtagaaggtcttggagtatcaacttctcctctattgaagtattt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24336270 |
cttggtactttctagtttctatagccattgtttcctttctctgaggaaggtactttgtagaaggtcttggagtatcaacttctcctctattgaagtattt |
24336171 |
T |
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| Q |
413 |
ttcagctccaaatactccaatttcttctgccttttcaacttgatgaagaggagagtttctatgattgataaagggattgtttgtttggcttgattcacca |
512 |
Q |
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| T |
24336170 |
ttcagctccaaatactccaatttcttctgccttttcaacttgatgaagaggagagtttctatgattgataaagggattgtttgtttggcttgattcacca |
24336071 |
T |
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| Q |
513 |
atttttgctataaactttccttctttgatatttaagtatggagagaaaacagcatcatggaggtggttgttattg |
587 |
Q |
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| T |
24336070 |
atttttgctataaagtttccttctttgatattcaagtatggagagaaaacagcatcatggaggtggttgttattg |
24335996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 173
Target Start/End: Original strand, 17745353 - 17745412
Alignment:
| Q |
114 |
ctgattccacttgcatggtcatttatatcaacagaattcttatcagaacaagaacatttg |
173 |
Q |
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| T |
17745353 |
ctgatttcacctgcatgatcacttacatcaacagaattcttatcataacaagagcatttg |
17745412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 36784660 - 36784692
Alignment:
| Q |
298 |
gagttccatactcaacttggtactttctagttt |
330 |
Q |
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| T |
36784660 |
gagttccatactcaactttgtactttctagttt |
36784692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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