View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9010_high_3 (Length: 418)
Name: NF9010_high_3
Description: NF9010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9010_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 7235199 - 7234798
Alignment:
| Q |
1 |
atcttcatatataaacctttacaatattatgaattatttgccaggtaaaatgtggcaatattacatggaaggtaaaatgaggcaaaatttaacaactgca |
100 |
Q |
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| T |
7235199 |
atcttcatatataaacctttacaatattatgaattatttgccaggtaaaatgtggcaatattacatggaaggtaaaatgaggcaaaatttaacaactgca |
7235100 |
T |
|
| Q |
101 |
tcccagaaaggccaagaaaacaacatgcataagcccgaggcaataaattgagaaatccataaacctttgcttgtatggttgtaaaaacacaacaatcctc |
200 |
Q |
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| T |
7235099 |
tcctagaaaggccaagaaaacaacatgcataagcctgaggcaataaattgagaaatccataaacctttgcttgtatggttgtaaaaacacaacaatcctc |
7235000 |
T |
|
| Q |
201 |
tcttacggtcaaataacattcactgatcttttaaatgataattcactcctgctaaacttagaaacaaaaataatgtatagcatcctatattgataaataa |
300 |
Q |
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| T |
7234999 |
tcttacagtcaaagaacattaactgatcttttaaatgataattcactcctgctaaacttagaaacaaaaataatgtatatcatcctatattgataaataa |
7234900 |
T |
|
| Q |
301 |
gactcaactattttctgtttgtgactgtttctaagaaagttgaaatcacattgatgctttaagccattcctgacatgccttcctgtatgtcaatctctga |
400 |
Q |
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| T |
7234899 |
gactcaactattttctgtttgtgactgtttctaagaaagttgaaatccaattgatgctttaagccattcctgacatgccttcctgtatgtcaatctctga |
7234800 |
T |
|
| Q |
401 |
tg |
402 |
Q |
| |
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|| |
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| T |
7234799 |
tg |
7234798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 62 - 270
Target Start/End: Complemental strand, 7221280 - 7221067
Alignment:
| Q |
62 |
tacatggaaggtaaaatgaggcaaaatttaacaactgcatcccagaaaggccaagaaaacaacatgcat------aagcccgaggcaataaattgagaaa |
155 |
Q |
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| T |
7221280 |
tacatggaaggaaaaatgaggcaaaatttaacaaatgcatccgagaaaagctaaaaaaacatcatgcatgaacataagcctgaggcaataaattgagaaa |
7221181 |
T |
|
| Q |
156 |
tccataaacctttgcttgtatggttgtaaaaacacaacaatcctctcttacggtcaaataacattcactgatcttttaaatgataattcactcctgctaa |
255 |
Q |
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| T |
7221180 |
tccataaacctttg-ttgtatgagtgtaaaatcacaacaatcctctcttacagtcaaagaacattaactgatctgtaaaataataattcacacctgctaa |
7221082 |
T |
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| Q |
256 |
acttagaaacaaaaa |
270 |
Q |
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| T |
7221081 |
acttacacacaaaaa |
7221067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 264 - 379
Target Start/End: Complemental strand, 7221013 - 7220896
Alignment:
| Q |
264 |
acaaaaataatgtatagcatcctatattgataaataagactcaactatttt--ctgtttgtgactgtttctaagaaagttgaaatcacattgatgcttta |
361 |
Q |
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||||||| |||||||| | |||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||| || || ||| |
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| T |
7221013 |
acaaaaacaatgtataacctcctatatcgataaataagacttaactattttagctgtttgtgactgtttctaagaaagttgaaatcccatcgacgcatta |
7220914 |
T |
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| Q |
362 |
agccattcctgacatgcc |
379 |
Q |
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|||||||| ||||||||| |
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| T |
7220913 |
agccattcatgacatgcc |
7220896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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