View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9010_high_6 (Length: 249)
Name: NF9010_high_6
Description: NF9010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9010_high_6 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr3 (5 HSPs) |
| |
|
| [»] scaffold0284 (1 HSPs) |
| | |
|
| [»] scaffold0114 (1 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold0021 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 42729887 - 42729652
Alignment:
| Q |
14 |
atggacatccgtaccaagcacgggttggaatttcgttatacttgagggagagaatattatgatttatcaagtgtgagttaaatcccacactgaatataaa |
113 |
Q |
| |
|
||||||| |||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42729887 |
atggacacccgtgccaagaacgggttgaaatttcgttatacttgagggagagaatattatgatttatcaagtgtgagttaaatcccacactgaatataaa |
42729788 |
T |
|
| Q |
114 |
agtgtaggttgaacaacaaacaagagaaaaatttatatacttaagtcttaaaatattgaatgaagatgtgatataattcttacatgtatgaccgatcttt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42729787 |
agtgtaggttgaacaacaaacaagagaaaaatttatatacttaagtcttaaaatgctggatgaagatgtgatataattcttacatgtatgaccgatcttt |
42729688 |
T |
|
| Q |
214 |
ctccaatgtgtcgatccacatcgttgttggctcccc |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
42729687 |
ctccaatgtgtcgatccacatcgttgttggctcccc |
42729652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 312135 - 312197
Alignment:
| Q |
14 |
atggacatccgtaccaagcacgggttggaatttcgttatacttgagggagagaatattatgat |
76 |
Q |
| |
|
||||||| |||| ||||||||||||| ||||||||| ||| |||||||| | ||||||||||| |
|
|
| T |
312135 |
atggacacccgtgccaagcacgggttagaatttcgtcatagttgagggatacaatattatgat |
312197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 64 - 247
Target Start/End: Original strand, 24174699 - 24174883
Alignment:
| Q |
64 |
agaatattatgatttatcaagtgtgagttaaa-tcccacactgaatataaaagtgtaggttgaacaacaaacaagagaaaaatttatatacttaagtctt |
162 |
Q |
| |
|
|||||||| |||| |||||||||||| ||||| ||| ||| |||||||||||| ||| ||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
24174699 |
agaatattgtgatgtatcaagtgtgaattaaagtccaacattgaatataaaagcgtaagttgaacaacaaataagagaaaaacttatatacttaagtctt |
24174798 |
T |
|
| Q |
163 |
aaaatattgaatgaagatgtgatataattcttacatgtatgaccgatctttctccaatgtgtcgatccacatcgttgttggctcc |
247 |
Q |
| |
|
||||| ||| ||||||||||||| |||||||| |||||||| | ||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
24174799 |
aaaatgttggatgaagatgtgattccattcttacttgtatgactgctctttctccaatgtgtcaatccacatcggtgttggctcc |
24174883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 14211698 - 14211616
Alignment:
| Q |
14 |
atggacatccgtaccaagcacgggttggaatttcgttatacttgagggagagaatattatgatttatcaagtgtgagttaaat |
96 |
Q |
| |
|
||||||| |||| ||||||||| | ||||||| | ||| |||||||||| ||||||||||| |||| ||||| |||||||| |
|
|
| T |
14211698 |
atggacacccgtgccaagcacgaactagaatttcatcatagttgagggagacaatattatgatgtatctagtgttagttaaat |
14211616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 125 - 249
Target Start/End: Complemental strand, 6088152 - 6088028
Alignment:
| Q |
125 |
aacaacaaacaagagaaaaatttatatacttaagtcttaaaatattgaatgaagatgtgatataattcttacatgtatgaccgatctttctccaatgtgt |
224 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||| |||||||| ||| ||||||||||||||||||||| || || |||| | |||||||||||||||| |
|
|
| T |
6088152 |
aacaacaaataagggaaaaatttatatacttaaaccttaaaattttggatgaagatgtgatataattctcacttgaatgagtgctctttctccaatgtgt |
6088053 |
T |
|
| Q |
225 |
cgatccacatcgttgttggctcccc |
249 |
Q |
| |
|
||||||||||| |||| ||||||| |
|
|
| T |
6088052 |
cgatccacatcagtgtttgctcccc |
6088028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 50239317 - 50239399
Alignment:
| Q |
14 |
atggacatccgtaccaagcacgggttggaatttcgttatacttgagggagagaatattatgatttatcaagtgtgagttaaat |
96 |
Q |
| |
|
||||||| |||| ||||||||||| | ||||||||| || |||||||||| ||||||||||| |||| ||||| |||||||| |
|
|
| T |
50239317 |
atggacacccgtgccaagcacgggctagaatttcgtcatggttgagggagacaatattatgatgtatctagtgtcagttaaat |
50239399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 10976842 - 10976762
Alignment:
| Q |
14 |
atggacatccgtaccaagcacgggttggaatttcgttatacttgagggagagaatattatgatttatcaagtgtgagttaa |
94 |
Q |
| |
|
||||||| || | ||||| ||||| | ||||||||| ||| ||||||||||||||||| |||| | |||||| | |||||| |
|
|
| T |
10976842 |
atggacacccatgccaagtacgggctagaatttcgtcatatttgagggagagaatattgtgatgtttcaagtattagttaa |
10976762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 17763836 - 17763916
Alignment:
| Q |
14 |
atggacatccgtaccaagcacgggttggaatttcgttatacttgagggagagaatattatgatttatcaagtgtgagttaa |
94 |
Q |
| |
|
||||||| |||| ||||||||||| | ||||||||| ||| |||||| | ||||| || ||| |||||||||| |||||| |
|
|
| T |
17763836 |
atggacacccgtgccaagcacgggctagaatttcgtcatatttgaggcaaagaatgttgtgacgtatcaagtgtcagttaa |
17763916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 19065156 - 19065236
Alignment:
| Q |
14 |
atggacatccgtaccaagcacgggttggaatttcgttatacttgagggagagaatattatgatttatcaagtgtgagttaa |
94 |
Q |
| |
|
||||||| |||| ||||||||||| | ||||||||| ||| |||||| | ||||| || ||| |||||||||| |||||| |
|
|
| T |
19065156 |
atggacacccgtgccaagcacgggctagaatttcgtcatatttgaggcaaagaatgttgtgacgtatcaagtgtcagttaa |
19065236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 201
Target Start/End: Original strand, 36719766 - 36719939
Alignment:
| Q |
29 |
aagcacgggttggaatttcgttatacttgagggagagaatattatgatttatcaagtgtgagttaaa-tcccacactgaatataaaagtgtaggttgaac |
127 |
Q |
| |
|
||||||||| | | |||| || ||| |||||||||| ||||| |||| ||| |||||||| ||||| ||||||| ||||||||| ||| |||||||||| |
|
|
| T |
36719766 |
aagcacgggctagcattttgtcatatttgagggagacgatattgtgatgtat-aagtgtgatttaaagtcccacattgaatataagagtataggttgaac |
36719864 |
T |
|
| Q |
128 |
aacaaacaagagaaa-aatttatatacttaagtcttaaaatattgaatgaagatgtgatataattcttacatgta |
201 |
Q |
| |
|
|||||| ||| |||| || ||||||||| | | |||||| ||| ||||||||||||||| |||||||| |||| |
|
|
| T |
36719865 |
aacaaataagggaaacaacttatatactcaggctttaaaaagttggatgaagatgtgatatcattcttacttgta |
36719939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 2593361 - 2593294
Alignment:
| Q |
15 |
tggacatccgtaccaagcacgggttggaatttcgttatacttgagggagagaatattatgatttatca |
82 |
Q |
| |
|
|||||| |||| ||||||||||| | ||||||| |||||||||||||||||||||| |||| ||||| |
|
|
| T |
2593361 |
tggacacccgtgccaagcacgggctagaatttccatatacttgagggagagaatattttgatgtatca |
2593294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 39406356 - 39406294
Alignment:
| Q |
14 |
atggacatccgtaccaagcacgggttggaatttcgttatacttgagggagagaatattatgat |
76 |
Q |
| |
|
||||||| |||| |||| |||||| | ||||||| | ||| |||||||||||||||||||||| |
|
|
| T |
39406356 |
atggacacccgtgccaaacacgggctagaatttcatcatagttgagggagagaatattatgat |
39406294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 249
Target Start/End: Original strand, 34723028 - 34723128
Alignment:
| Q |
148 |
atatacttaagtcttaaaatattgaatgaagatgtgatataattcttacatgtatgaccgatctttctccaatgtgtcgatccacatcgttgttggctcc |
247 |
Q |
| |
|
|||||||||||||||| ||| |||||||| |||||| ||| ||| | || |||||| | |||||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
34723028 |
atatacttaagtcttacaattttgaatgatgatgtggtatcattttcacttgtatggttgttctttctctaatgt-tcgatccacattagtgttggctcc |
34723126 |
T |
|
| Q |
248 |
cc |
249 |
Q |
| |
|
|| |
|
|
| T |
34723127 |
cc |
34723128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 36729559 - 36729506
Alignment:
| Q |
140 |
aaaaatttatatacttaagtcttaaaatattgaatgaagatgtgatataattct |
193 |
Q |
| |
|
||||| |||||||||| ||||||||||| ||||||||| ||||| ||| ||||| |
|
|
| T |
36729559 |
aaaaacttatatacttgagtcttaaaattttgaatgaatatgtggtatcattct |
36729506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 40114531 - 40114449
Alignment:
| Q |
14 |
atggacatccgtaccaagcacgggttggaatttcgttatacttgagggagagaatattatgatttatcaagtgtgagttaaat |
96 |
Q |
| |
|
||||||| |||| ||||||||||||| ||||||||| ||| |||||||||| ||||||||||| ||| ||||| |||||||| |
|
|
| T |
40114531 |
atggacacccgtgccaagcacgggttagaatttcgtcatagttgagggagacaatattatgatgtatttagtgtcagttaaat |
40114449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 41529117 - 41529035
Alignment:
| Q |
14 |
atggacatccgtaccaagcacgggttggaatttcgttatacttgagggagagaatattatgatttatcaagtgtgagttaaat |
96 |
Q |
| |
|
||||||| |||| ||||||||||| | ||||||||| ||| | |||||||| ||||||||||| |||| ||||| |||||||| |
|
|
| T |
41529117 |
atggacacccgtgccaagcacgggctagaatttcgtcatagtcgagggagacaatattatgatgtatctagtgtcagttaaat |
41529035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 14373559 - 14373626
Alignment:
| Q |
20 |
atccgtaccaagcacgggttggaatttcgttatacttgagggagagaatattatgatttatcaagtgt |
87 |
Q |
| |
|
|||||| | ||||||||| | |||||||||||||||| ||| | |||||||| ||||||||||||||| |
|
|
| T |
14373559 |
atccgtgctaagcacgggctagaatttcgttatacttaaggtaaagaatattgtgatttatcaagtgt |
14373626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 16221959 - 16221892
Alignment:
| Q |
29 |
aagcacgggttggaatttcgttatacttgagggagagaatattatgatttatcaagtgtgagttaaat |
96 |
Q |
| |
|
||||||||| | ||||||||| ||| |||||||||| ||||||||||| |||| ||||| |||||||| |
|
|
| T |
16221959 |
aagcacgggctagaatttcgtcatagttgagggagacaatattatgatgtatctagtgtcagttaaat |
16221892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 23142217 - 23142160
Alignment:
| Q |
14 |
atggacatccgtaccaagcacgggttggaatttcgttatacttgagggagagaatatt |
71 |
Q |
| |
|
||||||| |||| ||||||||||| | ||||||||| || ||| |||||||||||||| |
|
|
| T |
23142217 |
atggacacccgtgccaagcacgggctagaatttcgtcatccttaagggagagaatatt |
23142160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0284 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0284
Description:
Target: scaffold0284; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 3080 - 2998
Alignment:
| Q |
14 |
atggacatccgtaccaagcacgggttggaatttcgttatacttgagggagagaatattatgatttatcaagtgtgagttaaat |
96 |
Q |
| |
|
||||||| |||| ||||||||||| | ||||||||| | | |||||| ||| ||||||||||| |||| ||||| |||||||| |
|
|
| T |
3080 |
atggacacccgtgccaagcacgggctagaatttcgtcaaagttgaggtagacaatattatgatgtatctagtgtcagttaaat |
2998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0114 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0114
Description:
Target: scaffold0114; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 34479 - 34561
Alignment:
| Q |
14 |
atggacatccgtaccaagcacgggttggaatttcgttatacttgagggagagaatattatgatttatcaagtgtgagttaaat |
96 |
Q |
| |
|
||||||| |||| |||||||||| | ||||||||| ||| |||| ||||| ||||||||||| |||| ||||| |||||||| |
|
|
| T |
34479 |
atggacacccgtgtcaagcacgggctagaatttcgtcatagttgatggagacaatattatgatgtatctagtgtcagttaaat |
34561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 32259495 - 32259413
Alignment:
| Q |
14 |
atggacatccgtaccaagcacgggttggaatttcgttatacttgagggagagaatattatgatttatcaagtgtgagttaaat |
96 |
Q |
| |
|
||||||| |||| |||||||||| | |||||||| ||| |||||||||| ||||||||||| |||| ||||| |||||||| |
|
|
| T |
32259495 |
atggacacccgtgccaagcacggactaaaatttcgtcatagttgagggagacaatattatgatgtatctagtgtcagttaaat |
32259413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 6679643 - 6679562
Alignment:
| Q |
14 |
atggacatccgtaccaagcacgggttggaatttcgttatacttgagggagagaatattatgatttatcaagtgtgagttaaa |
95 |
Q |
| |
|
||||||||| || |||| |||||| | ||||||| | || |||||||||||||||||||||| ||| ||| || ||||||| |
|
|
| T |
6679643 |
atggacatctgtgccaaacacgggctagaatttcatcattgttgagggagagaatattatgatgtattaagagttagttaaa |
6679562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 126190 - 126230
Alignment:
| Q |
24 |
gtaccaagcacgggttggaatttcgttatacttgagggaga |
64 |
Q |
| |
|
|||||||||||||| | ||||||||| |||||||||||||| |
|
|
| T |
126190 |
gtaccaagcacgggctagaatttcgtcatacttgagggaga |
126230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 129430 - 129350
Alignment:
| Q |
14 |
atggacatccgtaccaagcacgggttggaatttcgttatacttgagggagagaatattatgatttatcaagtgtgagttaa |
94 |
Q |
| |
|
||||||| |||| |||||||| || | |||||||| ||| ||||| ||||||||||| |||| |||||||| | |||||| |
|
|
| T |
129430 |
atggacacccgtgccaagcactggctaaaatttcgtcatatttgagcgagagaatattgtgatgtatcaagtattagttaa |
129350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University