View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9010_low_1 (Length: 819)
Name: NF9010_low_1
Description: NF9010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9010_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 624; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 54 - 803
Target Start/End: Complemental strand, 34872817 - 34872066
Alignment:
| Q |
54 |
ttttttgtgacaaattcaaatatagtatcaaaataattttaaattttatgtacaaaaatatgagttgtgtacattaaaataattaaataaaggacccgtt |
153 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34872817 |
ttttttgtgacaaattcaaatatagtatcaaaataattttaaattttatgtacaacaatatgagttgtgtacattaaaagaattaaataaaggacccgtt |
34872718 |
T |
|
| Q |
154 |
tgcaccctataattgttttcttttaagcttaattattgacatgttttatgtactttatgttcgtaggaaaaatgcagcacattcataagcttgttaagaa |
253 |
Q |
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||||||||||||||||||||||||||||||| ||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
34872717 |
tgcaccctataattgttttcttttaagcttagttactaacatgttttccgtactttatgttcgtaggaaaaatgcagcacattcataagcttgttaagca |
34872618 |
T |
|
| Q |
254 |
atctagcaggaagttggccagccgaggcggcggtaggaggatagacatccacaacgtcaacaccatgattgctggggcaggactggactcttcttctcag |
353 |
Q |
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| T |
34872617 |
atctagcaggaagttggccagccgaggcggcggtaggaggatagacatccaccacgtcaacaccatgattgctggggcaggactggactcttcttctcag |
34872518 |
T |
|
| Q |
354 |
caggcagtggaggtggccgatgacgacaatatggaggtagaggcgagcaactctctcaaggggaatagggtggagcctgttgacaaagggaagaatgtgc |
453 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34872517 |
caggtagtggaggtggccgatgacgacaatatggaggtagaggtgagcaactctctcaaggggaatagggtggagcctgttgacaaagggaagaatgtgc |
34872418 |
T |
|
| Q |
454 |
ccgtcaaagttgtgcctcttcggtctgagggagaggatctgctccagctgttgaacgtgcggtccgatcctgatcgatatggcccccactcgaccatttg |
553 |
Q |
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| T |
34872417 |
ccgtcaaagttgtgcctcttcagtctcagggagaggatttgctccaactgttgaacgtgtggtccgatcctgatcgatatggcccccactcgaccatttg |
34872318 |
T |
|
| Q |
554 |
ccgcagtgatctaaagctgaaggttattcaagacctgggaaccgctggccggggtaaaactgcaatgactaaaggttattcaaagtgtctacatatgcat |
653 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34872317 |
ccgcagtgatctaaagctgaaggttattcaagacctgggaaccgctggccggagcaaaactgcaatgactgaaggttattcaaagtgtctacatatgcat |
34872218 |
T |
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| Q |
654 |
catgagttcttctcctaaaattttcaattatg--tgtgggctatttaccgtgtcctatagnnnnnnnattttgacgtttctccgtgcctattttatcaca |
751 |
Q |
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| T |
34872217 |
catgagttcttttcctaaaattttcaattatgtgtgtgtgctatttaccgtgtcctgcagtttttttattttgacgtttctccgtgcctattttatcaca |
34872118 |
T |
|
| Q |
752 |
tgtcaaagtcaacatcaatgcttcacatgttatagtaaatatatattcaaac |
803 |
Q |
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| T |
34872117 |
tgtcaaagtcaacatcaatgcttcacatgttatagtaaatatatatttaaac |
34872066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 638 - 799
Target Start/End: Original strand, 34873391 - 34873554
Alignment:
| Q |
638 |
gtgtctacatatgcatcatgagttcttctcctaaaattttcaattatgtgtgggc--tatttaccgtgtcctatagnnnnnnnattttgacgtttctccg |
735 |
Q |
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|||||||||||||||||| |||||||| | ||||||||| ||||||||||| || |||||||| ||||||| || |||||||||||||| || |
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| T |
34873391 |
gtgtctacatatgcatcacgagttcttttattaaaatttttaattatgtgtgtgcactatttaccatgtcctacagtttttttattttgacgtttctgcg |
34873490 |
T |
|
| Q |
736 |
tgcctattttatcacatgtcaaagtcaacatcaatgcttcacatgttatagtaaatatatattc |
799 |
Q |
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| T |
34873491 |
tgcctattttatcacatgtcaaagtcaacatcaatgcttcacaggttatagtaaatatatattc |
34873554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 721 - 803
Target Start/End: Complemental strand, 9918868 - 9918786
Alignment:
| Q |
721 |
tttgacgtttctccgtgcctattttatcacatgtcaaagtcaacatcaatgcttcacatgttatagtaaatatatattcaaac |
803 |
Q |
| |
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||||| ||||||| ||||||||||| ||||||||||||| ||||| || || |||| | |||||||||||||||||||||||| |
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| T |
9918868 |
tttgatgtttctctgtgcctattttgtcacatgtcaaagccaacaccattgtttcataagttatagtaaatatatattcaaac |
9918786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 34872896 - 34872855
Alignment:
| Q |
19 |
cttgtgggccgcaaagcgtcaccctacttcctagcttttttg |
60 |
Q |
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| T |
34872896 |
cttgtgggccgcaaagcgtcaccctacttgctagcttatttg |
34872855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 646 - 682
Target Start/End: Original strand, 34874981 - 34875017
Alignment:
| Q |
646 |
atatgcatcatgagttcttctcctaaaattttcaatt |
682 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| |
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| T |
34874981 |
atatgcatcatgagttcttttcctaaaattttcaatt |
34875017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 67 - 173
Target Start/End: Original strand, 27951239 - 27951345
Alignment:
| Q |
67 |
attcaaatatagtatcaaaataattttaaattttatgtacaaaaatatgagttgtgtacattaaaataattaaataaaggacccgtttgcaccctataat |
166 |
Q |
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||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||| ||||||| |||||||||||||||| |||| ||||||| || |
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| T |
27951239 |
attcaaatatagtatcaaaataattttaaattttatgtaaaacaatatgagttgcgtagattaaaagaattaaataaaggacctatttgtaccctatgat |
27951338 |
T |
|
| Q |
167 |
tgttttc |
173 |
Q |
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||||||| |
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| T |
27951339 |
tgttttc |
27951345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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