View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9010_low_11 (Length: 441)

Name: NF9010_low_11
Description: NF9010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9010_low_11
NF9010_low_11
[»] chr1 (2 HSPs)
chr1 (1-424)||(7669795-7670227)
chr1 (18-424)||(7089969-7090410)


Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 7670227 - 7669795
Alignment:
Q  1 agagttatttttccatggttttctctgcaatatatgttctcattccatcattgttaatatactaaatacattgcacttaggaaaaaatgttatattgttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7670227 agagttatttttccatggttttctctgcaatatatgttctcattccatcattgttaatatactaaatacattgcacttaggaaaaaatgttatattgttt 7670128  T
Q  101 tgtatgctttcataaaaaacatgaagtctaatttcttcttttcaaacacaatggctatgctagatttctagtcatacataatgcctttcaagagtattgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7670127 tgtatgctttcataaaaaacatgaagtctaatttcttcttttcaaacacaatggctatgctagatttctagtcatacataatgcctttcaagagtattgt 7670028  T
Q  201 gagagagatcaaggagatgaaagagggaattggcaacatgtatagaagagatgtagaaaccaaacatacacatagacatggaaaatctcacatagcacca 300  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7670027 gagagagatcaaggagatgaaagagggaattggcaacatgtatataagagatgtagaaaccaaacatacacatagacatggaaaatctcacatagcacca 7669928  T
Q  301 gaatgttcatcaccaatatcactatcagcaccaacaacaccatcattatcatcat---------catcttcagagtcaatgggctaacttacctcctgag 391  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||         ||||||||||||||||||||||||||||||||||||    
T  7669927 gaatgttcctcaccaatatcactatcagcaccaacaacaccatcatcatcatcatcatcatcatcatcttcagagtcaatgggctaacttacctcctgag 7669828  T
Q  392 ttactattagacataattcaaagggtggaagct 424  Q
    |||||||||||||||||||||||||||||||||    
T  7669827 ttactattagacataattcaaagggtggaagct 7669795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 7090410 - 7089969
Alignment:
Q  18 gttttctctgcaatatatgttctcattccatcattgttaatatactaaatacattgcacttaggaaaaaatgttatattgttttgtatgctttcataaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  7090410 gttttctctgcaatatatgttctcattccatcattgttaatacactaaatacattgaacttaggcaaaaatgttatattgttttgtatgctttcataaaa 7090311  T
Q  118 aacatgaagtctaatttcttcttttcaaacacaatggctatgctagatttctagtcata------------------cataatgcctttcaagagtattg 199  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||                  ||||||||| |||||||||||||    
T  7090310 aacaagaagcctaatttcttcttttcaaacacaatggctatgctagatttctagtcctacatatatacacaacttatcataatgccattcaagagtattg 7090211  T
Q  200 tgagagagatcaaggagatgaaagagggaattggcaacatgtatagaagagatgtagaaaccaaacatacacatagacatggaaaatctcacatagcacc 299  Q
    | | |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||  |||||||||||||||||||||||||||||    
T  7090210 taaaagagctcaaggagatgaaagagggaattggcaacatgtatagaagaggtgtagaaactaagcatatgcatagacatggaaaatctcacatagcacc 7090111  T
Q  300 agaatgttcatcaccaatatcactatcagcaccaacaacaccatcat---tatcatcatcatctt--------------cagagtcaatgggctaactta 382  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||   | ||||||||||| |              ||||||||||||||||| |||    
T  7090110 agaatgttcttcaccaatatcactatcagtaccaacaacaccatcatcgctgtcatcatcatcatcatcatcatcatcacagagtcaatgggctaattta 7090011  T
Q  383 cctcctgagttactattagacataattcaaagggtggaagct 424  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  7090010 cctcccgagttactattagacataattcaaagggtggaagct 7089969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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