View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9010_low_14 (Length: 333)
Name: NF9010_low_14
Description: NF9010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9010_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 34097118 - 34097364
Alignment:
| Q |
11 |
tttggtgtttcaagtgttttcatttttcttctcttcctagtttttaaatcacactcttaatcttaataaatattttggtatataatgaattataatagat |
110 |
Q |
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| T |
34097118 |
tttgatgtttcaagtgttttcttttttcttctcttcctagtttttaaatcacactcttaaccttaataaatattttggtatataatgaattataatagat |
34097217 |
T |
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| Q |
111 |
acttagtctattaacatttgattaagggtttgatttttgaccgatgcgtataaaaaacatatgttagaagagttcaccttcttaatagaatctcaattag |
210 |
Q |
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| T |
34097218 |
acttagtctattaacatttgattaagggtttgatttttgaccgatgcgtatgaaaaacatatgttagaagagttcaccttcttaatagaatctcaattag |
34097317 |
T |
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| Q |
211 |
ctataaggattagtctcctcgattgtgtgcgaaaatgctttgattta |
257 |
Q |
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| T |
34097318 |
ctataaggattagtctcctcgattgtgtgcgaaaatactttgattta |
34097364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 318
Target Start/End: Original strand, 34097388 - 34097422
Alignment:
| Q |
284 |
acacgtccatataaacctagaaggctagaactatg |
318 |
Q |
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| T |
34097388 |
acacgcccatataaacctagaaggctagaactatg |
34097422 |
T |
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