View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9010_low_15 (Length: 329)

Name: NF9010_low_15
Description: NF9010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9010_low_15
NF9010_low_15
[»] chr4 (4 HSPs)
chr4 (18-313)||(17279001-17279297)
chr4 (33-216)||(3462289-3462478)
chr4 (18-212)||(13602494-13602693)
chr4 (18-84)||(5505949-5506015)
[»] scaffold0004 (1 HSPs)
scaffold0004 (16-240)||(226014-226243)
[»] chr1 (7 HSPs)
chr1 (37-234)||(27272147-27272349)
chr1 (18-163)||(22585977-22586122)
chr1 (44-158)||(18895270-18895382)
chr1 (18-84)||(16887172-16887239)
chr1 (31-78)||(49331168-49331215)
chr1 (260-310)||(22585826-22585875)
chr1 (97-158)||(30984881-30984942)
[»] chr6 (3 HSPs)
chr6 (32-236)||(23142342-23142551)
chr6 (31-91)||(22724959-22725019)
chr6 (31-78)||(22337725-22337772)
[»] chr7 (5 HSPs)
chr7 (18-212)||(9634553-9634752)
chr7 (44-216)||(16192056-16192233)
chr7 (20-148)||(17857029-17857161)
chr7 (33-78)||(21585435-21585480)
chr7 (18-137)||(16177879-16177990)
[»] scaffold0013 (1 HSPs)
scaffold0013 (31-220)||(6136-6330)
[»] chr5 (1 HSPs)
chr5 (18-216)||(17349861-17350063)
[»] scaffold0079 (1 HSPs)
scaffold0079 (18-191)||(16253-16428)
[»] chr3 (2 HSPs)
chr3 (117-229)||(8815821-8815938)
chr3 (44-216)||(14801207-14801376)
[»] chr8 (5 HSPs)
chr8 (31-158)||(22471060-22471187)
chr8 (18-148)||(8989680-8989810)
chr8 (18-78)||(16722326-16722386)
chr8 (31-78)||(28914419-28914466)
chr8 (35-67)||(40545955-40545987)
[»] chr2 (6 HSPs)
chr2 (18-91)||(29801371-29801444)
chr2 (44-148)||(18371906-18372010)
chr2 (18-158)||(21872662-21872801)
chr2 (31-158)||(27180728-27180854)
chr2 (31-158)||(27830270-27830396)
chr2 (18-84)||(18830392-18830458)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 17279001 - 17279297
Alignment:
Q  18 tgttcattggtttttagtgtgatttgttgttaataggtttggtttgagattgtttagtttttcaattcgaatgtatttgtattgattgttgatatgcttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  17279001 tgttcattggtttttagtgtgatttgttgttaataggtttggtttgagattgtttagttttgcaattcgaatgtatttgtattgattgttgatatgctcc 17279100  T
Q  118 ataagattcattatttgaacctctcaattcatctttgaatcgtattaacattgtcttaattttgttatcatcatcacccacaaattcaatagtcatactt 217  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  17279101 ataagattcattatttgaacctctcaattcagctttgaatcatattaacattgtcttaattttgttatcatcaacacacacaaattcaatagtcatactt 17279200  T
Q  218 ttggttatccaagctttcgt-aaaccttttnnnnnnnnnnnnncgttattcacccccatccagcgcacttcctagtttgtcatatacactaacattc 313  Q
    |||||||||||||||||||| |||||||||             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17279201 ttggttatccaagctttcgtaaaaccttttaaaaatgaaaaaacgttattcacccccatctagcgcacttcctagtttgtcatatacactaacattc 17279297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 33 - 216
Target Start/End: Complemental strand, 3462478 - 3462289
Alignment:
Q  33 agtgtgatttgttgttaataggtttggtttgagattgtttagtttttcaattcgaatgtatttgtattgattgttgatatgcttcataagattcattatt 132  Q
    |||||||||| || |||||||||||||||||||||| ||||||||| ||||| |||||||| |||||| |||||||||||||| ||||||||||||||||    
T  3462478 agtgtgattttttattaataggtttggtttgagattttttagttttgcaatttgaatgtatgtgtattaattgttgatatgctccataagattcattatt 3462379  T
Q  133 tgaacctctcaattcatctttgaatcgtatt-----aacattgtcttaattttgttatcatcatcacccacaaattcaa-tagtcatact 216  Q
    |||||||||||||||| |||| |||| ||||       ||||||||| ||||||||||||||||||| ||||||| ||| ||||||||||    
T  3462378 tgaacctctcaattcacctttaaatcttatttgatattcattgtcttgattttgttatcatcatcacgcacaaatgcaattagtcatact 3462289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 13602693 - 13602494
Alignment:
Q  18 tgttcattggtttttagtgtgatttgttgttaataggtttggtttgagattgtttagtttttcaattcgaatgtatttgtattgattgttgatatgcttc 117  Q
    |||||||| ||| ||||||||||||||| |||||||||||| ||||||||||||||||||| ||||| | ||||||   |||||||  ||||| ||||      
T  13602693 tgttcattagttgttagtgtgatttgtttttaataggtttgatttgagattgtttagttttgcaattggtatgtatgaatattgataattgatttgctca 13602594  T
Q  118 ataagattcattatttgaacctctcaattcatctttgaatcgt-----attaacattgtcttaattttgttatcatcatcacccacaaattcaatagtca 212  Q
    |||| | |||||||||||||||||||||||| ||||||||  |      |   |||||||||||||||||||||||| || | |||||||||||||||||    
T  13602593 ataaaactcattatttgaacctctcaattcagctttgaatgttggttgttgttcattgtcttaattttgttatcatcgtctcacacaaattcaatagtca 13602494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 5506015 - 5505949
Alignment:
Q  18 tgttcattggtttttagtgtgatttgttgttaataggtttggtttgagattgtttagtttttcaatt 84  Q
    |||| ||| ||| |||||||| ||||||||||||| ||||||||||||||||||||||||| |||||    
T  5506015 tgtttattagttgttagtgtgctttgttgttaataagtttggtttgagattgtttagttttgcaatt 5505949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 226014 - 226243
Alignment:
Q  16 tctgttcattggtttttagtgtgatttgttgttaataggtttggtttgagattgtttagtttttcaattcgaatgtatttgtattgattgttgatatgct 115  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||   ||| |||||||| |||||||||| ||||| ||||    
T  226014 tctgttcattagttgttagtgtgatttgttgttaataggtttgatttgagattgtttagttttgggatttgaatgtatctgtattgattattgatttgct 226113  T
Q  116 tcataagattcattatttgaacctctcaattcatctttgaatcgtatt-----aacattgtcttaattttgttatcatcatcacccacaaattcaatagt 210  Q
     ||||||| | ||||||||||||||||||||||| |||||||| ||||       |||| ||||||||||||| || |||||   |||||||| || | |    
T  226114 ccataagactaattatttgaacctctcaattcatttttgaatcttattttttattcattatcttaattttgttttcctcatcttacacaaatttaacaat 226213  T
Q  211 catacttttggttatccaagctttcgtaaa 240  Q
    |||||| ||| | ||||| |||||||||||    
T  226214 catactcttgttaatccacgctttcgtaaa 226243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 37 - 234
Target Start/End: Original strand, 27272147 - 27272349
Alignment:
Q  37 tgatttgttgttaataggtttggtttgagattgtttagtttttcaattcgaatgtatttgtattgattgttgatatgcttcataagattcattatttgaa 136  Q
    ||||||||||||||| |||||||| |||||||||||||||||  |||| ||||| || |||||||||| ||||| || ||||||||||||||||||||||    
T  27272147 tgatttgttgttaatgggtttggtgtgagattgtttagttttgaaatttgaatgcatgtgtattgattattgatttgtttcataagattcattatttgaa 27272246  T
Q  137 cctctcaattcatctttgaatcgt-----attaacattgtcttaattttgttatcatcatcacccacaaattcaatagtcatacttttggttatccaagc 231  Q
    |||||||||||| ||||||||  |     |||  |||||| ||||||||||||||||  || | ||||||||||||||||||||| ||| | ||||| ||    
T  27272247 cctctcaattcagctttgaatattatttgattttcattgttttaattttgttatcattgtcgcacacaaattcaatagtcatactcttgttaatccacgc 27272346  T
Q  232 ttt 234  Q
    |||    
T  27272347 ttt 27272349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 22586122 - 22585977
Alignment:
Q  18 tgttcattggtttttagtgtgatttgttgttaataggtttggtttgagattgtttagtttttcaattcgaatgtatttgtattgattgttgatatgcttc 117  Q
    |||||||| ||| || |||||||||||| |||||| |||||||||||||||||||||||||| |||| | |||||| |||||| ||| ||||| | || |    
T  22586122 tgttcattagttgttggtgtgatttgttattaataagtttggtttgagattgtttagtttttaaatttgtatgtatgtgtattaattattgatttactcc 22586023  T
Q  118 ataagattcattatttgaacctctcaattcatctttgaatcgtatt 163  Q
    ||||||||||||||||||| ||||||||||| ||||||||| ||||    
T  22586022 ataagattcattatttgaagctctcaattcaactttgaatcttatt 22585977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 44 - 158
Target Start/End: Complemental strand, 18895382 - 18895270
Alignment:
Q  44 ttgttaataggtttggtttgagattgtttagtttttcaattcgaatgtatttgtattgattgttgatatgcttcataagattcattatttgaacctctca 143  Q
    |||||| ||| |||||||| ||||||||| ||||| ||||| | |||||| |||  ||||| ||||  ||||  ||||||||||||||||||||||||||    
T  18895382 ttgttattagttttggtttaagattgtttggttttgcaatttggatgtatgtgt--tgattattgacttgctatataagattcattatttgaacctctca 18895285  T
Q  144 attcatctttgaatc 158  Q
    |||||||||||||||    
T  18895284 attcatctttgaatc 18895270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 16887172 - 16887239
Alignment:
Q  18 tgttcattggtttttagtgtgatttgttg-ttaataggtttggtttgagattgtttagtttttcaatt 84  Q
    |||||||| ||| |||||||||||| ||| ||||||| ||| |||||||||  |||||||||||||||    
T  16887172 tgttcattagttgttagtgtgatttattgattaatagatttcgtttgagatactttagtttttcaatt 16887239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 49331215 - 49331168
Alignment:
Q  31 ttagtgtgatttgttgttaataggtttggtttgagattgtttagtttt 78  Q
    |||||| |||||||| ||||||||||||||||| ||| ||||||||||    
T  49331215 ttagtgggatttgttattaataggtttggtttgtgatagtttagtttt 49331168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 310
Target Start/End: Complemental strand, 22585875 - 22585826
Alignment:
Q  260 cgttattcacccccatccagcgcacttcctagtttgtcatatacactaaca 310  Q
    |||||||||||||| |  ||||||||||||||||||||||||| |||||||    
T  22585875 cgttattcacccccttt-agcgcacttcctagtttgtcatatagactaaca 22585826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 30984942 - 30984881
Alignment:
Q  97 tattgattgttgatatgcttcataagattcattatttgaacctctcaattcatctttgaatc 158  Q
    |||||||  ||||| ||||| | ||||||||  ||||||||||||||||||| |||||||||    
T  30984942 tattgatatttgatgtgcttaaaaagattcaacatttgaacctctcaattcaactttgaatc 30984881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 32 - 236
Target Start/End: Complemental strand, 23142551 - 23142342
Alignment:
Q  32 tagtgtgatttgttgttaataggtttggtttgagattgtttagtttttcaattcgaatgtatttgtattgattgttgatatgcttcataagattcattat 131  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||  |||| ||| |||| | |||||||  ||||| |||| |||||||||| ||||    
T  23142551 tagtgtgatttgttgttaataagtttggtttgagattttttagttttagaatttgaacgtatctttattgatgattgatttgctccataagattcgttat 23142452  T
Q  132 ttgaacctctcaattcatctttgaatcgtatt-----aacattgtcttaattttgttatcatcatcacccacaaattcaatagtcatacttttggttatc 226  Q
    |||||| | |||||||| ||||||||| ||||       ||||||||||||||||||||||||||||| ||||||||||||| || |||||| | | |||    
T  23142451 ttgaacttgtcaattcaactttgaatcttatttgatattcattgtcttaattttgttatcatcatcacgcacaaattcaataatcgtactttagttaatc 23142352  T
Q  227 caagctttcg 236  Q
    || |||||||    
T  23142351 cacgctttcg 23142342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 22724959 - 22725019
Alignment:
Q  31 ttagtgtgatttgttgttaataggtttggtttgagattgtttagtttttcaattcgaatgt 91  Q
    |||||||||||| ||| |||||| ||||||||||||| |||||||||| ||||| ||||||    
T  22724959 ttagtgtgatttattgataatagttttggtttgagatagtttagttttgcaatttgaatgt 22725019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 22337725 - 22337772
Alignment:
Q  31 ttagtgtgatttgttgttaataggtttggtttgagattgtttagtttt 78  Q
    ||||||| ||||||||||||   |||||||||||||||||||||||||    
T  22337725 ttagtgtaatttgttgttaacgtgtttggtttgagattgtttagtttt 22337772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 9634553 - 9634752
Alignment:
Q  18 tgttcattggtttttagtgtgatttgttgttaataggtttggtttgagattgtttagtttttcaattcgaatgtatttgtattgattgttgatatgcttc 117  Q
    |||||||| ||| ||||||||||||||| |||||||||||| ||||||||||||||||||| ||||| | ||||||   |||||||  ||||| ||||      
T  9634553 tgttcattagttgttagtgtgatttgtttttaataggtttgatttgagattgtttagttttgcaattggtatgtatgaatattgataattgatttgctca 9634652  T
Q  118 ataagattcattatttgaacctctcaattcatctttgaatcgt-----attaacattgtcttaattttgttatcatcatcacccacaaattcaatagtca 212  Q
    |||| | |||||||||||||||||||||||| ||||||||  |      |   |||||||||||||||||||||||| || | |||||||||||||||||    
T  9634653 ataaaactcattatttgaacctctcaattcagctttgaatgttggttgttgttcattgtcttaattttgttatcatcgtctcacacaaattcaatagtca 9634752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 44 - 216
Target Start/End: Original strand, 16192056 - 16192233
Alignment:
Q  44 ttgttaataggtttggtttgagattgtttagtttttcaattcgaatgtatttgtattgattgttgatatgcttcataagattcattatttgaacctctca 143  Q
    ||||||||||||||||||||| || |||||||||| |||||  ||||||| ||||||||||  |||| |||| ||||||||| ||| ||||||| || ||    
T  16192056 ttgttaataggtttggtttgaaatagtttagttttgcaatttaaatgtatgtgtattgattaatgatttgctccataagattgattctttgaacttcaca 16192155  T
Q  144 attcatctttgaatcgtatt-----aacattgtcttaattttgttatcatcatcacccacaaattcaatagtcatact 216  Q
    |||||  |||||||| ||||       ||||||| |||||||||||||||||| || ||||||||| |||||||||||    
T  16192156 attcacatttgaatcttatttgatattcattgtcctaattttgttatcatcattacgcacaaattcgatagtcatact 16192233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 17857029 - 17857161
Alignment:
Q  20 ttcattggtttttagtgtgatttgttgttaataggtttggtttgagattgtttagtttttcaattcgaat------gtatttgtattgattgttgatatg 113  Q
    |||||| ||| |||||||||||||||||||||||| |||||||||||| ||||||| ||  |||| ||||      |||| |||||||  | ||||| ||    
T  17857029 ttcattagttgttagtgtgatttgttgttaatagggttggtttgagatagtttagtattggaattggaatttgaaagtatgtgtattg--tattgatttg 17857126  T
Q  114 cttcataagattcattatttgaacctctcaattca 148  Q
    || ||||||||||||||||||||||||||||||||    
T  17857127 ctccataagattcattatttgaacctctcaattca 17857161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 21585480 - 21585435
Alignment:
Q  33 agtgtgatttgttgttaataggtttggtttgagattgtttagtttt 78  Q
    |||||||||| ||||||||||||||||||| |||| ||||||||||    
T  21585480 agtgtgatttattgttaataggtttggttttagatagtttagtttt 21585435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 16177879 - 16177990
Alignment:
Q  18 tgttcattggtttttagtgtgatttgttgttaataggtttggtttgagattgtttagtttttcaattcgaatgtatttgtattgattgttgatatgcttc 117  Q
    |||||||| ||| |||||| ||||||||| |||||| |||||||| |||| || ||| ||        || |||||||||||| ||||||||| | || |    
T  16177879 tgttcattagttgttagtgggatttgttggtaatagatttggtttaagatagtctagctt--------gactgtatttgtattcattgttgattttctcc 16177970  T
Q  118 ataagattcattatttgaac 137  Q
    ||| ||||||||||||||||    
T  16177971 ataggattcattatttgaac 16177990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 31 - 220
Target Start/End: Complemental strand, 6330 - 6136
Alignment:
Q  31 ttagtgtgatttgttgttaataggtttggtttgagattgtttagtttttcaattcgaatgtatttgtattgattgttgatatgcttcataagattcatta 130  Q
    ||||||||||||||||||||| ||||||||||||||||   |||||||  ||||   |||||| |||||| ||| ||||| | || | ||||||||||||    
T  6330 ttagtgtgatttgttgttaatgggtttggtttgagatttagtagttttggaatttatatgtatgtgtattaattattgatttcctccgtaagattcatta 6231  T
Q  131 tttgaacctctcaattcatctttgaatcgtatt-----aacattgtcttaattttgttatcatcatcacccacaaattcaatagtcatacttttg 220  Q
    ||| || ||||||||| | ||||||||| ||||       ||||||||||||||||||||||||||||  ||||||||||||||||||| |||||    
T  6230 tttaaatctctcaatttagctttgaatcttatttgttattcattgtcttaattttgttatcatcatcatgcacaaattcaatagtcatagttttg 6136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 17349861 - 17350063
Alignment:
Q  18 tgttcattggtttttagtgtgatttgttgttaataggtttggtttgagattgtttagtttttcaattcgaatgtatttgtattgattgttgatatgcttc 117  Q
    |||||||| ||| ||||||||||||||||| |||||||||| ||| | || ||||||||||  || | | || | | |||||||||||||||| | |||     
T  17349861 tgttcattagttgttagtgtgatttgttgtaaataggtttgatttaa-atagtttagttttggaacttgtatatgtgtgtattgattgttgattttcttt 17349959  T
Q  118 ataagattcattatttgaacctctcaattcatctttgaatc-----gtattaacattgtcttaattttgttatcatcatcacccacaaattcaatagtca 212  Q
    |||||| ||||||||||||| |||||||||| |||||||||      ||||  |||||||||||||||||||||||||  |  |||||||||||||||||    
T  17349960 ataagagtcattatttgaacttctcaattcacctttgaatcttagtttattttcattgtcttaattttgttatcatcactaagcacaaattcaatagtca 17350059  T
Q  213 tact 216  Q
    ||||    
T  17350060 tact 17350063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 16428 - 16253
Alignment:
Q  18 tgttcattggtttttagtgtgatttgttgttaataggtttggtttgagattgtttagtttttcaattcgaatgtatttgtattgattgttgatatgcttc 117  Q
    |||||||| ||| ||||||||||||||||||| ||||||| ||||||||| |||||||||| ||||| | |||  | |||||||||||||||  | |||     
T  16428 tgttcattagttgttagtgtgatttgttgttactaggtttagtttgagatagtttagttttgcaatttgtatg--tgtgtattgattgttgaatttcttt 16331  T
Q  118 ataagattcattatttgaacctctcaattcatctttgaatcgt--attaa---cattgtcttaattttgttatcatcat 191  Q
    |||||||||||| ||| ||||||||||||||  |||||||| |  ||| |   |||||||||| |||||||||||||||    
T  16330 ataagattcatt-ttttaacctctcaattcacttttgaatctttgatttacctcattgtcttagttttgttatcatcat 16253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 117 - 229
Target Start/End: Complemental strand, 8815938 - 8815821
Alignment:
Q  117 cataagattcattatttgaacctctcaattcatctttgaatcgtatt---aa--cattgtcttaattttgttatcatcatcacccacaaattcaatagtc 211  Q
    |||||||||||||||||||||||||||||||| ||||||||  ||||   ||  ||||||||||||||||||||||||||||| | || |||| ||||||    
T  8815938 cataagattcattatttgaacctctcaattcagctttgaatgttattcgtaattcattgtcttaattttgttatcatcatcacacccacattcgatagtc 8815839  T
Q  212 atacttttggttatccaa 229  Q
    || |||||||| ||||||    
T  8815838 atgcttttggtaatccaa 8815821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 216
Target Start/End: Original strand, 14801207 - 14801376
Alignment:
Q  44 ttgttaataggtttggtttgagattgtttagtttttcaattcgaatgtatttgtattgattgttgatatgcttcataagattcattatttgaacctctca 143  Q
    ||||||||||||||||||||||||||||| ||||| ||||| | |||||  ||| |||||| ||||    ||  ||||||||||||||||||||||| ||    
T  14801207 ttgttaataggtttggtttgagattgtttcgttttgcaatttggatgta--tgtgttgattattga----ctatataagattcattatttgaacctcgca 14801300  T
Q  144 attcatctttga-----atcgtattaacattgtcttaattttgttatcatcatcacccacaaattcaatagtcatact 216  Q
    ||||||  ||||     ||  ||||  |||||||||||| || |||||||||  || ||||||||||||| |||||||    
T  14801301 attcatacttgattcttattttattttcattgtcttaatcttcttatcatca--acacacaaattcaataatcatact 14801376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 31 - 158
Target Start/End: Complemental strand, 22471187 - 22471060
Alignment:
Q  31 ttagtgtgatttgttgttaataggtttggtttgagattgtttagtttttcaattcgaatgtatttgtattgattgttgatatgcttcataagattcatta 130  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| | ||   |   |||||||  ||||| ||||| |||||||||| ||    
T  22471187 ttagtgtgatttattgttaataggtttgatttgagattgtttagttttgcaatttgtatacttgaatattgatatttgatttgcttaataagattcaata 22471088  T
Q  131 tttgaacctctcaattcatctttgaatc 158  Q
    ||||||  |||||||||| |||||||||    
T  22471087 tttgaaaatctcaattcagctttgaatc 22471060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 8989680 - 8989810
Alignment:
Q  18 tgttcattggtttttagtgtgatttgttgttaataggtttggtttgagattgtttagtttttcaattcgaatgtatttgtattgattgttgatatgcttc 117  Q
    |||||||| |||| ||||||||||| || ||||||||||||||||||||||||||||||||  |||| | |||  |   |||| ||  || || | |||     
T  8989680 tgttcattagtttatagtgtgatttattattaataggtttggtttgagattgtttagttttgaaatttgtatgcttgaatatttatattttattttctta 8989779  T
Q  118 ataagattcattatttgaacctctcaattca 148  Q
    |||||||||| ||||||||||||||||||||    
T  8989780 ataagattcaatatttgaacctctcaattca 8989810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 16722326 - 16722386
Alignment:
Q  18 tgttcattggtttttagtgtgatttgttgttaataggtttggtttgagattgtttagtttt 78  Q
    |||||||| ||||||||| |||||| ||||||||||||||| ||||||||  |||||||||    
T  16722326 tgttcattagtttttagtatgatttattgttaataggtttgatttgagatactttagtttt 16722386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 28914466 - 28914419
Alignment:
Q  31 ttagtgtgatttgttgttaataggtttggtttgagattgtttagtttt 78  Q
    |||||||||||| |||  ||||||||||| ||||||||||||||||||    
T  28914466 ttagtgtgatttattgcaaataggtttggattgagattgtttagtttt 28914419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 40545955 - 40545987
Alignment:
Q  35 tgtgatttgttgttaataggtttggtttgagat 67  Q
    |||||||| ||||||||||||||||||||||||    
T  40545955 tgtgatttattgttaataggtttggtttgagat 40545987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 29801371 - 29801444
Alignment:
Q  18 tgttcattggtttttagtgtgatttgttgttaataggtttggtttgagattgtttagtttttcaattcgaatgt 91  Q
    |||||||| ||| |||||||||||| || ||||||||||||||||||||| ||||| |||| ||||| ||||||    
T  29801371 tgttcattagttgttagtgtgatttattcttaataggtttggtttgagatagtttaattttgcaatttgaatgt 29801444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 18371906 - 18372010
Alignment:
Q  44 ttgttaataggtttggtttgagattgtttagtttttcaattcgaatgtatttgtattgattgttgatatgcttcataagattcattatttgaacctctca 143  Q
    |||||||||||||   ||||||||||||||||||||||||| | ||||||   |||||||  ||||| |  ||| ||||||||||||||||||| | |||    
T  18371906 ttgttaataggttcaatttgagattgtttagtttttcaatttgtatgtatgaatattgataattgattttgttcttaagattcattatttgaacttatca 18372005  T
Q  144 attca 148  Q
    |||||    
T  18372006 attca 18372010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 21872662 - 21872801
Alignment:
Q  18 tgttcattggtttttagtgtgatttgttgttaataggtttggtttgagattgtttagtttttcaattcgaatgtatttgtattgattgttgatatgcttc 117  Q
    ||||||||  || |||||||||||| ||||||| |||||| |||||||||||||||||||| ||||| | |||  |   | |||||  ||||| | | |     
T  21872662 tgttcattacttgttagtgtgatttattgttaaaaggttttgtttgagattgtttagttttgcaatttgtatgattgaattttgatatttgatttac-ta 21872760  T
Q  118 ataagattcattatttgaacctctcaattcatctttgaatc 158  Q
    |||||||||| |||||||||||||||||| | |||||||||    
T  21872761 ataagattcaatatttgaacctctcaattaaactttgaatc 21872801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 158
Target Start/End: Original strand, 27180728 - 27180854
Alignment:
Q  31 ttagtgtgatttgttgttaataggtttggtttgagattgtttagtttttcaattcgaatgtatttgtattgattgttgatatgcttcataagattcatta 130  Q
    ||||||||||||||||  |||||||||||||| ||||||||| |||||  |||| | |||  |   |||||||  |||||  |||| |||||||| | ||    
T  27180728 ttagtgtgatttgttgcaaataggtttggtttcagattgttt-gttttgaaatttgtatgcttgaatattgatatttgatgcgcttaataagatttaata 27180826  T
Q  131 tttgaacctctcaattcatctttgaatc 158  Q
    |||||||| ||||||||| |||||||||    
T  27180827 tttgaaccactcaattcaactttgaatc 27180854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 158
Target Start/End: Original strand, 27830270 - 27830396
Alignment:
Q  31 ttagtgtgatttgttgttaataggtttggtttgagattgtttagtttttcaattcgaatgtatttgtattgattgttgatatgcttcataagattcatta 130  Q
    ||||||||||||||||  |||||||||||||| ||||||||| |||||  |||| | |||  |   |||||||  |||||  |||| |||||||| | ||    
T  27830270 ttagtgtgatttgttgcaaataggtttggtttcagattgttt-gttttgaaatttgtatgcttgaatattgatatttgatgcgcttaataagatttaata 27830368  T
Q  131 tttgaacctctcaattcatctttgaatc 158  Q
    |||||||| ||||||||| |||||||||    
T  27830369 tttgaaccactcaattcaactttgaatc 27830396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 18830458 - 18830392
Alignment:
Q  18 tgttcattggtttttagtgtgatttgttgttaataggtttggtttgagattgtttagtttttcaatt 84  Q
    |||||||| ||| ||  |||||||| ||| |||||||||| ||||||| |||||||||||| |||||    
T  18830458 tgttcattagttgtttatgtgatttattgctaataggtttagtttgagtttgtttagttttgcaatt 18830392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University