View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9010_low_2 (Length: 815)
Name: NF9010_low_2
Description: NF9010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9010_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 733; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 733; E-Value: 0
Query Start/End: Original strand, 37 - 802
Target Start/End: Original strand, 55381556 - 55382323
Alignment:
| Q |
37 |
ttggtggttgaggtcaaagtggaatgatgtaggcaggagcccgaggtgatgtgtgggttcaatgaagcatggcagaactcgcctcacttggcactccaat |
136 |
Q |
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| T |
55381556 |
ttggtggttgaggtcaaagtggaatgatgtaggcaggagcccgaggtgttgtgtgggttcaatgaagcatggcagagctcgcctcacttggcactccaat |
55381655 |
T |
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| Q |
137 |
gttgactcaaagtgttgtttcgtgcacatatggcagatcttggaattggagatgaagaaattttgatcaccaaaggaaacgtcattgtcaccaatggtat |
236 |
Q |
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| T |
55381656 |
gttgactcaaagtgttgtttcgtgcacatatggcagatcttggaattggagatgaagaaattttgatcaccaaaggaaacgtcattgtcaccaatggtat |
55381755 |
T |
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| Q |
237 |
caataactcgaccatttttacataggtcaacataggtggtggatgggggaaggacgagcgagagagggatgattttcttcgtttttaaatacatatcctt |
336 |
Q |
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| T |
55381756 |
cagtaacccgaccatttttacataggtcaacataggtggtggatgggggaaggacgagcgagagagggatgattttcttcgtttttaaatacatatcctt |
55381855 |
T |
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| Q |
337 |
aaataataaaatttaaaaacaatccc--acaatttgttttaaagtcaaagaaatatgtttctaacaacttaataaatcaatgcataaacaattatgtctt |
434 |
Q |
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| T |
55381856 |
aaataataaaatttaaaaacaatcccccacaatttgttttaaagtcaaagaaatatgtttctaacaacttaataaatcaatgcataaacaattatgtctt |
55381955 |
T |
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| Q |
435 |
ttagacgacaaactagcatgagacaaatgagctatgatccctaaaaatatcaatgaggttatgacctctatagacataccagtagcaaacagattagaaa |
534 |
Q |
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| T |
55381956 |
ttagacgacaaactagcatgagacaaatgagctatgatccctaaaaatatcaattaggttatgacctctatagacataccagtagcaaacagattagaaa |
55382055 |
T |
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| Q |
535 |
ggccagggaaatattgctttgtgataaacgaaacaatagccataaatacaagaagaatgaaaatcattttctataatggtacagtaatagcattcactag |
634 |
Q |
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| T |
55382056 |
ggccagggaaatattgctttgtgataaacgaaacaatagccataaatacaagaagaatgaaaatcattttctataatggtacagtaatagcattcactag |
55382155 |
T |
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| Q |
635 |
catcttcaagctaattaaagacgtgttctatccattgttccaacacatcaggggaaccataccatggtctaatgagatcatctgaaccaaccggggagtg |
734 |
Q |
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| T |
55382156 |
catcttcaagctaattaaagaggtgttctatccattgttccaacacatcaggggaaccataccatggtctaatgagatcatctgaaccaaccggggagtg |
55382255 |
T |
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| Q |
735 |
gtaaactccatccagggaaatgttaagtgcaccgtcaagatgagctgatacttctggcacaacaccat |
802 |
Q |
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| T |
55382256 |
gtaaactccatccagggaaatgttaagtgcaccgtcaagatgagctgatacttctggcacaacaccat |
55382323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 55381451 - 55381496
Alignment:
| Q |
37 |
ttggtggttgaggtcaaagtggaatgatgtaggcaggagcccgagg |
82 |
Q |
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| T |
55381451 |
ttggtggttgaggtcaaagtggaatgatgtaggcaggagcccgagg |
55381496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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