View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9010_low_28 (Length: 236)
Name: NF9010_low_28
Description: NF9010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9010_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 679870 - 680076
Alignment:
| Q |
19 |
atcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaagtt |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
679870 |
atcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaataaaaaaacttacagaggcatcgaagtt |
679969 |
T |
|
| Q |
119 |
ggtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaagtggcggcggagatgttatggttccagccgtatggacga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
679970 |
ggtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaagtggtggcggagatgttatggttccagccgtatggacga |
680069 |
T |
|
| Q |
219 |
tgatgtc |
225 |
Q |
| |
|
||||||| |
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|
| T |
680070 |
tgatgtc |
680076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 747788 - 747999
Alignment:
| Q |
19 |
atcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaagtt |
118 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
747788 |
atcatgaggtggtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaataaaaaaacttacagaggcatcgaagtt |
747887 |
T |
|
| Q |
119 |
g-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaagtggcggcggagatgttatggttccagccgtatg |
213 |
Q |
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| T |
747888 |
gtacgagtaatttgatgggaagcctaccgagaaactcagggaaaacatcgaatggaagagtgggaagtggcggcggagatgttatggttccagccgtatg |
747987 |
T |
|
| Q |
214 |
gacgatgatgtc |
225 |
Q |
| |
|
|||||||||||| |
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|
| T |
747988 |
gacgatgatgtc |
747999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 755297 - 755445
Alignment:
| Q |
21 |
catgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaagttg- |
119 |
Q |
| |
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|||||||| ||||||||| ||||| |||||||| || || ||||||||| ||||||||| ||||||||||| |||||||||||| || || || |
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| T |
755297 |
catgaggtggtggcgctttgttgacaattgaagatgtttttttgcgaattttggatcagaaataagagaattgaaagacttacagaggcaccgcagctgt |
755396 |
T |
|
| Q |
120 |
----gtaatttgatgggaaacctaccgagaatctcagggaggacatcga |
164 |
Q |
| |
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||||||||||||||| ||||| ||||||||||| |||||||||| |
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|
| T |
755397 |
ccgagtaatttgatgggaagcctacaaagaatctcaggcaggacatcga |
755445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 2476051 - 2475887
Alignment:
| Q |
21 |
catgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaagttg- |
119 |
Q |
| |
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|||||||| ||||||||| ||||| ||||||||||| |||||||||||| | ||||||| ||||||||||| |||||| ||||| ||||| || |
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| T |
2476051 |
catgaggtggtggcgctttgttgacaattgaaggtgtttctttgcgaatttaggatcagaaataagagaattgaaaaacttacaaaggcaccgaagctgt |
2475952 |
T |
|
| Q |
120 |
----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag |
180 |
Q |
| |
|
||||||||| || |||||| ||||||||||| |||||||| ||| ||||||||||||| |
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|
| T |
2475951 |
acgagtaatttgacaggtaacctaaacagaatctcaggcaggacatcaaagggaagagtgggaag |
2475887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 181
Target Start/End: Complemental strand, 2474511 - 2474346
Alignment:
| Q |
21 |
catgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaagttg- |
119 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||| |||||||||||| | |||| | ||| | ||||| |||||||||||| ||||| || |
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| T |
2474511 |
catgaggtggtggcgcttgtttgataattgaaggtgtttctttgcgaatctgggattggaaattaaagaattaaagaacttacagaggcaccgaagctgt |
2474412 |
T |
|
| Q |
120 |
----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaagt |
181 |
Q |
| |
|
||||||||| ||||| ||||| |||||||||||| |||| ||| ||| |||||||||||||| |
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|
| T |
2474411 |
acaggtaatttgacgggaagcctacagagaatctcaggcaggagatcaaagggaagagtgggaagt |
2474346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 9595289 - 9595361
Alignment:
| Q |
19 |
atcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaat |
91 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||||||||| |||||||| ||| ||||||||| ||||||||||| |
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| T |
9595289 |
atcatgaggtggtggcgctttgttgacaattgaaggtgattctttgcaaattttggatcagaaataagagaat |
9595361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 7334936 - 7335100
Alignment:
| Q |
21 |
catgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaagttg- |
119 |
Q |
| |
|
|||||||| ||||||||| ||||| |||||||||||||||||||||||| ||||||||| |||| ||||| ||||||||| |||||||| || |
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| T |
7334936 |
catgaggtggtggcgctttgttgacaattgaaggtgcttctttgcgaattttggatcagagataacagaattaaagaacttacagagacatcgaagctgt |
7335035 |
T |
|
| Q |
120 |
----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag |
180 |
Q |
| |
|
||||||| | |||| ||||| ||||||||||| |||||||| || ||||||| ||||| |
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|
| T |
7335036 |
acgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaag |
7335100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 9566487 - 9566651
Alignment:
| Q |
21 |
catgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaagttg- |
119 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||| || || ||||||||| ||||||||| ||||||||||| ||| |||||||| ||||| || |
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|
| T |
9566487 |
catgaggtgatggcgctttgttgacaattgaagatgtttttttgcgaattttggatcagaaataagagaattgaaggacttgcagaggcaccgaagctgt |
9566586 |
T |
|
| Q |
120 |
----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag |
180 |
Q |
| |
|
||||||| ||||||| ||||| ||||||||||| | |||||||||| ||||||| ||||| |
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|
| T |
9566587 |
ccgagtaatttcatgggaagcctacaaagaatctcaggcaagacatcgaagggaagagtaggaag |
9566651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 180
Target Start/End: Original strand, 7325065 - 7325226
Alignment:
| Q |
24 |
gaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaagttg---- |
119 |
Q |
| |
|
||||| |||||||||||||||||||||||| || ||||||||||| || ||||||| ||| | ||||| |||||||||||| ||||| || |
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| T |
7325065 |
gaggtggtggcgcttagttgataattgaagatgtttctttgcgaaagtgggatcagaaattaaagaattgaagaacttacagaggcaccgaagctgtatg |
7325164 |
T |
|
| Q |
120 |
-gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag |
180 |
Q |
| |
|
||||||| | |||| ||| | |||||||||||| | ||||||||| ||||||| ||||| |
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|
| T |
7325165 |
agtaatttcacaggaagcctgcagagaatctcaggtaagacatcgaaaggaagagttggaag |
7325226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 9562631 - 9562672
Alignment:
| Q |
24 |
gaggttgtggcgcttagttgataattgaaggtgcttctttgc |
65 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9562631 |
gaggtggtggcgcttagttgacaattgaaggtgcttctttgc |
9562672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 2634905 - 2634861
Alignment:
| Q |
158 |
acatcgaagagaagagtgggaagtggcggcggagatgttatggtt |
202 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2634905 |
acatcgaacggaagagtcggaagtggcggcggagatgttatggtt |
2634861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 7443785 - 7443823
Alignment:
| Q |
142 |
gagaatctcagggaggacatcgaagagaagagtgggaag |
180 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||| |
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|
| T |
7443785 |
gagaatctcagggaggagatcgaagggaagagtgggaag |
7443823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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