View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9010_low_3 (Length: 722)

Name: NF9010_low_3
Description: NF9010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9010_low_3
NF9010_low_3
[»] chr8 (1 HSPs)
chr8 (20-704)||(42716811-42717503)


Alignment Details
Target: chr8 (Bit Score: 622; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 20 - 704
Target Start/End: Complemental strand, 42717503 - 42716811
Alignment:
Q  20 tccataagcaaaacaaggaattgattacaaacctgctgtccagcaacactgttattgaaactaccagcatcatcggtacctgtaaaagaatggcgataac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42717503 tccataagcaaaacaaggaattgattacaaacctgctgtccagcaacactgttattgaaactaccagcatcatcggtacctgtaaaagaatggcgataac 42717404  T
Q  120 tcatcaaatgcactaatttgaatataagtttccaaatgctaagtaattcataaaaacgcatcaatgccataacaaaat--ccacaaaaagcacttcgaac 217  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  42717403 tcatcaaatgcactaatttgaatataactttccaaatgctaagtaattcataaaaacgcatcaatgccataacaaaatatccacaaaaagcacttcgaac 42717304  T
Q  218 tcaatagcatttatttgtttccaatcataaacgccaataacatggagtgaaattcagctatcaaatttannnnnnn------cattatccacatccgcgt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||              ||||||||||||||||||    
T  42717303 tcaatagcatttatttgtttccaatcataaacgccaataacatggagtgaaattcagctatcaatttttttatttttattttcattatccacatccgcgt 42717204  T
Q  312 caatctcatagaacaaatcagaaaattgcaaaggtatccaaaattggaaagaaattcaaattaatcggcattgtggaagagagtttcagaaacgaaatta 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42717203 caatctcatagaacaaatcagaaaattgcaaaggtatccaaaattggaaagaaattcaaattaatcggcattgtggaagagagtttcagaaacgaaatta 42717104  T
Q  412 aacaagagaaattgaaaaatgcaagtagagaagatagatctagaaaccttcgttctgttcattttcgggaaactctctttcaagagcacgatcaatcatg 511  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42717103 aacaagagaaattgaaaaatgcaagtacagaagatagatctagaaaccttcgttctgttcattttcgggaaactctctttcaagagcacgatcaatcatg 42717004  T
Q  512 ttagcgagactatcttcattggatcccgcaagcgaagcattgccaacggcggttacgttagtttccggtagaagaagttccgtctccaccgtcgagttag 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42717003 ttagcgagactatcttcattggatcccgcaagcgaagcattgccaacggcggttacgttagtttccggtagaagaagttccgtctccaccgtcgagttag 42716904  T
Q  612 cggcgaggagagagaaagagaatgaaggataacaaagaagtagatggcagagaatgaggactttgagaatcgcatgtgatgataacctcatct 704  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42716903 cggcgaggagagagaaagagaatgaaggataacaaagaagtagatggcagagaatgaggactttgagaatcgcatgtgatgataacctcatct 42716811  T

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