View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9010_low_4 (Length: 641)
Name: NF9010_low_4
Description: NF9010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9010_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 105 - 622
Target Start/End: Complemental strand, 41389407 - 41388895
Alignment:
| Q |
105 |
catatttgtgcatcaaatatcaaatttagaaaacctgtttaacgtacaagaggatgaatttcatatataatccaatacatggacatgtattaggacaaaa |
204 |
Q |
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| T |
41389407 |
catatttgtgcatcaaatatcaaatttagaaaacctgtttaacgtacaagaggatgaatttcatatataatccaatacatggacatgtatttggacaaaa |
41389308 |
T |
|
| Q |
205 |
aatggagggcctgatttaacttacttgaaaagtatatactgtggttattcttcctttttggtataaaactatagcaccctactcaacttcaattatgatt |
304 |
Q |
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| T |
41389307 |
aatggagggcctgatttaacttgcttgaaaagtatatactgtggttattcttcttttttggtataaaactatagcaccctactcaacttcaattatgatt |
41389208 |
T |
|
| Q |
305 |
atggagaagcatgtagataaattgaaatgtctttgatttatagttaaagatcaagatcaactgttcaacattaccaattggtaattggtaaaacaaaata |
404 |
Q |
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| T |
41389207 |
atggagaagcatgtagataaattgaaatgtctttgatttatagttaaagatcaagatcaactgttcaacattaccaattggtaattggtaaaacaaaata |
41389108 |
T |
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| Q |
405 |
aatgaaagaattaactatgccatgtaactccagcttcagtgacttcaccgttctaacattacataaatactttatcaagaaaaaattatccatcgtcgca |
504 |
Q |
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| T |
41389107 |
aatgaaagaattaactatgccatgtaactccagcttcagtgacttcaccgttctaacattacataaatactttatcaagaaaaaattatccatcgtcgca |
41389008 |
T |
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| Q |
505 |
agtcgctattgaattgcgaaacaagaacattgtacctaaaccaaaccaaaccattttgcagcattctaaaagcatttcctgtgtacaattgaaggaccag |
604 |
Q |
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| T |
41389007 |
agtcgctattgaattgcgaaacaagaacattgtacctaaaccaa-----accattttgcagcattctaaaagcatttcctgtgtacaattgaaggaccag |
41388913 |
T |
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| Q |
605 |
attcatcgtactcggcct |
622 |
Q |
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| T |
41388912 |
attcatcgtactcggcct |
41388895 |
T |
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