View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9010_low_5 (Length: 578)
Name: NF9010_low_5
Description: NF9010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9010_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 20 - 535
Target Start/End: Original strand, 36332769 - 36333283
Alignment:
| Q |
20 |
atactaatgatttgtatttggaaatacagggaggtggtaacaaatcaggaggtgaaagcagtgattcagcactatcaagcaaaaatgagaacccttttga |
119 |
Q |
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| T |
36332769 |
atactaatgatttgtatttggaaatacagggaggtggtaacaaatcaggaggtgaaagcagtgattcagcactatcaagcaaaaatgagaacccttttga |
36332868 |
T |
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| Q |
120 |
gccagaatcacccttaagtagtaaaaaagcatcttctttttcatcagatcataataataataatatggatcagcagaatcttcagctacaacaacagaag |
219 |
Q |
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| T |
36332869 |
gccagaatcacccttaagtagtaaaaaagcatcttctttttcatcagatc---ataataataatatggatcagcagaatcttcagctacaacaacagaag |
36332965 |
T |
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| Q |
220 |
atgataatatccaatgatgcttctgctgctataagaacagcctcttcatcacagaatcaaatatcagcagcagccaaagaaaaggttaatagt--nnnnn |
317 |
Q |
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| T |
36332966 |
atgataatatccaatgatgcttctgctgctataagaacagcctcttcatcacagaatcaaatatcagcagcagccaaagaaaaggttaatagtaaaaaaa |
36333065 |
T |
|
| Q |
318 |
nntaatcactgatactgttaaagtgttaaatcacttagttatctgtttccatatcccataaactaagggaaagtttggtctttctttatttactgttttg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36333066 |
aataatcactgatactgttaaagtgttaaatcacttagttatctgtttccatatcccataaactaagggaaagtttggtctttctttatttactgttttg |
36333165 |
T |
|
| Q |
418 |
aatttgtactatcttcttggtcacgtaaaaacagcacagatcccaacagatttcagaaaatcaaaacaacagagagttttcctgattcctgaacgatttt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36333166 |
aatttgtactatcttcttggtcacgtaaaaacagcacagatcccaacagatttcagaaaatcaaaacaacagagagttttcctgattcctgaacgatttt |
36333265 |
T |
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| Q |
518 |
ctgacatgaaaacatgat |
535 |
Q |
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|||||||||||||||||| |
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| T |
36333266 |
ctgacatgaaaacatgat |
36333283 |
T |
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