View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9010_low_7 (Length: 465)
Name: NF9010_low_7
Description: NF9010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9010_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 10 - 432
Target Start/End: Original strand, 44313065 - 44313474
Alignment:
| Q |
10 |
agatggacatcaatagataagtcatatgcaaaagcaaacaatgcaatatgtaggagtgcatccaatttctccaaagctcacaaaacccccattctgttgg |
109 |
Q |
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| T |
44313065 |
agatggacattaatagataagtcatatgcaaaagcaaacaatgcaatatgtaggagtgcatccgatttctccaaagctcacaaaacccccattctgttgg |
44313164 |
T |
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| Q |
110 |
tgaacaaattaattttggttttgtgaaaacaaggaagaattgtgaaaagagagaatattgaagaggattgaaatatgaggaaaaggcttaacttgtttat |
209 |
Q |
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| T |
44313165 |
tgaacaaattaattttggttttgtgaaaacaaggaagaattgtgaaaagagagaat----------attgaaatatgaggaaaaggcttaacttgtttat |
44313254 |
T |
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| Q |
210 |
tcacataaaggaagtatatatacaatacaagtagctggtggcttacttgcaccacaagtaatggttctagccttaactaactagctaagaaataggaaaa |
309 |
Q |
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| T |
44313255 |
tcacataaaggaagtatatatacaatacaagtagttggtggcttacttgcaccacaagtaatggttctagccttaactaactagctaagaaataggaaaa |
44313354 |
T |
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| Q |
310 |
aggtagttgttacacatcacgtgacannnnnnnncctgcataataatcttaactctggatgtctttctcatctattgaaatataaaaatatatttaatta |
409 |
Q |
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| T |
44313355 |
aggta---gttacacatcacgtgacattttttttcctgcataataatcttaactctggatgtctttctcatctattgaaatataaaaatatatttaatta |
44313451 |
T |
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| Q |
410 |
aaaactagatgcttcaattaatg |
432 |
Q |
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| T |
44313452 |
aaaactagatgcttcaattaatg |
44313474 |
T |
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