View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9010_low_9 (Length: 443)
Name: NF9010_low_9
Description: NF9010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9010_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 23379999 - 23380422
Alignment:
| Q |
1 |
agtgaattatgatatttccatctatatggccaatcataccgtcaaagaataaatcaatatacctatctcgtgtgcactaccctaaataaaaatcaaccct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23379999 |
agtgaattatgatatttccatctatatggccaatcataccgtcaaagaataaatcaatatacctatctcgtgtgcactgccctaaataaaaatcaaccct |
23380098 |
T |
|
| Q |
101 |
tgccatgcatagaacttagtaatttaataatcctatagtccatttcattggaattttttcaacatgcaccaactcctccagctgcagctcctcccccagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || | |
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| T |
23380099 |
tgccatgcatagaacttagtaatttaataatcctatagtccattgcattggaattttttcaacatgcaccaactcctccagctacagctcctcccacacc |
23380198 |
T |
|
| Q |
201 |
tcc------acctccaccaccaccgtcaaacgctccatcgccactgccaccgtcaaatgctccacctcctccgccgccatcaaatgcaccacctccgccg |
294 |
Q |
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|| | ||||||| ||||||||||| ||| |||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
23380199 |
accgtcaaaagctccaccgccaccgtcaaaagct------ccaccgccaccgtcaaatgctccacctcctccgccaccatcaaatgctccacctccgccg |
23380292 |
T |
|
| Q |
295 |
ccaaattctcccccaccattgtcaaatgctccatctccgcccccaccatcttcacctccacctcctccatcaaatgctccacctccgccgtcaaaacctc |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
23380293 |
ccaaattctcccccaccattgtcaaatgctccatctccgcccccaccatcttcacctccacctcctccatcaaatgctccacctccgccatcaaaacctc |
23380392 |
T |
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| Q |
395 |
cccctccgccaccgccaccgcttccatatg |
424 |
Q |
| |
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| |||||||||||||||||||||||||||| |
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| T |
23380393 |
cacctccgccaccgccaccgcttccatatg |
23380422 |
T |
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