View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_high_11 (Length: 582)
Name: NF9011_high_11
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 33 - 521
Target Start/End: Original strand, 26415926 - 26416414
Alignment:
| Q |
33 |
gaatcttctacagattttgatggtccacaaaagaagagaaaatgggaagaatcaccactttctgatcaagaattctttaaggatcttacacatgatcttg |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26415926 |
gaatcttctacagattttgatggtccacaaaagaagagaaaatgggaagaatcaccactttctgatcaagaattctttaaggatcttacacatgatcttg |
26416025 |
T |
|
| Q |
133 |
ggaaaagaaaatccatctttgatattgaacttcacctcaaaacacctttgccttcagataaatggcaacaatacctcacagttcaggtatataatatatc |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26416026 |
ggaaaagaaaatccatctttgatattgaacttcacctcaaaacacctttgccttcagataaatggcaacaatacctcactgttcaggtatataatatatc |
26416125 |
T |
|
| Q |
233 |
tccctccctttttataaccacattttcgcactatagtttttaattagagctcagattaatatatttcattttgacttgttcaaaataaattagagccgag |
332 |
Q |
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|| |||||||||||||| |||||||||||||| || ||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
26416126 |
tcactccctttttataagcacattttcgcactctaatttttaattagagttcaggttaatatatttcattttgacttattcaaaataaattagaaccgag |
26416225 |
T |
|
| Q |
333 |
gtagcaattatgttcttatgaagtaatttaattaatacatattcaatttttctcatgcagtcaggacaaatacaattgtgtaacacaaagatgaatatga |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26416226 |
gtagcaattatgttcttatgaagtaatttaattaatacatattcaatttttctcatgcagtcaggacaaatacaattgtgtaacacaaagatgaatatga |
26416325 |
T |
|
| Q |
433 |
aaacacaagaatcaaaaagagagtaccctttacctgaaaaatcatctcttggtcatttaagcttagaccttgagcttaatttgacatgt |
521 |
Q |
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| T |
26416326 |
aaacacaagaatcaaaaagagagtaccctttacctgaaaaatcatctcttggtcatttaagcttagaccttgagcttaatttgacatgt |
26416414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 326
Target Start/End: Complemental strand, 14432801 - 14432763
Alignment:
| Q |
288 |
ttaatatatttcattttgacttgttcaaaataaattaga |
326 |
Q |
| |
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||||||||||||||||| |||||||||||| |||||||| |
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| T |
14432801 |
ttaatatatttcattttaacttgttcaaaaaaaattaga |
14432763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 4347084 - 4347051
Alignment:
| Q |
288 |
ttaatatatttcattttgacttgttcaaaataaa |
321 |
Q |
| |
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||||||||||||||||||||||||| |||||||| |
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|
| T |
4347084 |
ttaatatatttcattttgacttgttgaaaataaa |
4347051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 317
Target Start/End: Original strand, 8462601 - 8462630
Alignment:
| Q |
288 |
ttaatatatttcattttgacttgttcaaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
8462601 |
ttaatatatttcattttgacttgttcaaaa |
8462630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 317
Target Start/End: Original strand, 50818606 - 50818635
Alignment:
| Q |
288 |
ttaatatatttcattttgacttgttcaaaa |
317 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
50818606 |
ttaatatatttcattttgacttgttcaaaa |
50818635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 288 - 320
Target Start/End: Original strand, 25435379 - 25435411
Alignment:
| Q |
288 |
ttaatatatttcattttgacttgttcaaaataa |
320 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
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| T |
25435379 |
ttaatataattcattttgacttgttcaaaataa |
25435411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 13496994 - 13497030
Alignment:
| Q |
288 |
ttaatatatttcattttgacttgttcaaaataaatta |
324 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||| |
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| T |
13496994 |
ttaatatatttcattttgacttgttaaaaaaaaatta |
13497030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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