View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_high_2 (Length: 835)
Name: NF9011_high_2
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 789; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 789; E-Value: 0
Query Start/End: Original strand, 18 - 821
Target Start/End: Original strand, 36939194 - 36939998
Alignment:
| Q |
18 |
agtttagacattcatcttttcaaaaatcaaagtttcttgaaatggggtgttagatatacaatagctagaggcttggcttctgcactgttatatttgcatg |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939194 |
agtttagacattcatcttttcaaaaatcaaagtttcttgaaatggggtgttagatatacaatagctagaggcttggcttctgcactgttatatttgcatg |
36939293 |
T |
|
| Q |
118 |
aagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttggattcagagtttaatgcaaaacttggagatttcggtttagcaag |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939294 |
aagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttggattcagagtttaatgcaaaacttggagatttcggtttagcaag |
36939393 |
T |
|
| Q |
218 |
gtttgtggaccatgcaaaaggtgcacaaactacagctttagcagggactttgggatacatggctcctgaatgtgctaccacaggaagagctagtaaagaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939394 |
gtttgtggaccatgcaaaaggtgcacaaactacagctttagcagggactttgggatacatggctcctgaatgtgctaccacaggaagagctagtaaagaa |
36939493 |
T |
|
| Q |
318 |
acagacgtgtatagttttggtattgttgctttagagatagcttgcggaagaaaacctataataaaccttaaggctcaagaaaatgaaatacatattgtgg |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939494 |
acagacgtgtatagttttggtattgttgctttagagatagcttgcggaagaaaacctataataaaccttaaggctcaagaaaatgaaatacatattgtgg |
36939593 |
T |
|
| Q |
418 |
agtgggtttgggggctatatggaagagggaaaattcttgaagcagtagatccaaaactagatggagattttgaacaagaacaaatcaagtgcatgatgat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939594 |
agtgggtttgggggctatatggaagagggaaaattcttgaagcagtagatccaaaactagatggagattttgaacaagaacaaatcaagtgcatgatgat |
36939693 |
T |
|
| Q |
518 |
tgttggtctttggtgtgctcatcctgctcctaataataggccttcaataagacaagctattcaagtgcttaattttgaagttccacttcctaatctttca |
617 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36939694 |
tgttggtctttggtgtgctcatcctgatcctaataataggccttcaataagacaagctattcaagtgcttaattttgaagttccacttcctaatctttca |
36939793 |
T |
|
| Q |
618 |
tcaagtatgcctgtaccaacatatcttgaggggcctttaaactctttttcagctccattcagcacaaataattcagaggaaagtcaaaacc-agaatata |
716 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36939794 |
tcaagtatgcctgtaccaacatatcttgaggggcctttaaactctttttcagctccattcagcacaaataattcagaggaaagtcaaaaccaagaatata |
36939893 |
T |
|
| Q |
717 |
aaaagctttagttcaacttcaaactcatcttgctattccgtatcctctaagactcttgcttttgaaaataacctaacaaggacctcacaatcaacctttg |
816 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36939894 |
aaaagctttagttcaacttcaaactcatcttgctattccgtatcctctaagactcttgcttttgaaaataaccaaacaaggacctcacaatcaacctttg |
36939993 |
T |
|
| Q |
817 |
atgtc |
821 |
Q |
| |
|
||||| |
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|
| T |
36939994 |
atgtc |
36939998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 18 - 746
Target Start/End: Complemental strand, 36941924 - 36941202
Alignment:
| Q |
18 |
agtttagacattcatcttttcaaaaatcaaagtttcttgaaatggggtgttagatatacaatagctagaggcttggcttctgcactgttatatttgcatg |
117 |
Q |
| |
|
||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| |||| || ||||||| |
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|
| T |
36941924 |
agtttagacattcatcttttcaagaaacaaagtttgttgaaatggggtgttagatatacaatagctaaaggcttggcatctgcattgttgtacttgcatg |
36941825 |
T |
|
| Q |
118 |
aagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttggattcagagtttaatgcaaaacttggagatttcggtttagcaag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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|
| T |
36941824 |
aagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttggattcagaatttaacgcaaaacttggagatttcggtttagcaag |
36941725 |
T |
|
| Q |
218 |
gtttgtggaccatgcaaaaggtgcacaaactacagctttagcagggactttgggatacatggctcctgaatgtgctaccacaggaagagctagtaaagaa |
317 |
Q |
| |
|
||||||||| ||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| |
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|
| T |
36941724 |
gtttgtggatcatgcaaaaggtggacaaaccacagctttagcagggactatgggatacatggctcctgaatgtgctaccacaggaagggccagtaaagaa |
36941625 |
T |
|
| Q |
318 |
acagacgtgtatagttttggtattgttgctttagagatagcttgcggaagaaaacctataataaaccttaaggctcaagaaaatgaaatacatattgtgg |
417 |
Q |
| |
|
|| || |||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| |||| |||||||||||||||||| | ||||||| |
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|
| T |
36941624 |
accgatgtgtatagttttggaattgttgctttagagatagcttgtggaagaaaaccaataa------ttaatgctcaagaaaatgaaataaacattgtgg |
36941531 |
T |
|
| Q |
418 |
agtgggtttgggggctatatggaagagggaaaattcttgaagcagtagatccaaaactagatggagattttgaacaagaacaaatcaagtgcatgatgat |
517 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||| |||| | ||||||||||||||||||||||| |
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|
| T |
36941530 |
aatgggtttgggggctatatggaagagggagaattgttgaagcagtagatccaagactagatggagattatgaagaggaacaaatcaagtgcatgatgat |
36941431 |
T |
|
| Q |
518 |
tgttggtctttggtgtgctcatcctgctcctaataataggccttcaataagacaagctattcaagtgcttaattttgaagttccacttcctaatctttca |
617 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| || |
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|
| T |
36941430 |
tgttggtctttggtgtgctcatcctgatcctaataataggccttcaataagacaagctattcaagtgcttaattttgaagttccattgcctaatcttcca |
36941331 |
T |
|
| Q |
618 |
tcaagtatgcctgtaccaacatatcttgaggggcctttaaactctttttcagctccattcagcacaaataattcagaggaaagtcaaaaccagaatataa |
717 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| || || || | |||||||||| ||||||| |||||||||| ||| |||| ||||||| |
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|
| T |
36941330 |
tcaagtatgcctgtaccaacatatcttgatggccctttgaattcattcactgctccattcaacacaaatggttcagaggaaggtccaaacatgaatatag |
36941231 |
T |
|
| Q |
718 |
aaagctttagttcaacttcaaactcatct |
746 |
Q |
| |
|
||||||||||||||| | ||||||||||| |
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|
| T |
36941230 |
aaagctttagttcaaatacaaactcatct |
36941202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 590 - 655
Target Start/End: Original strand, 36946587 - 36946652
Alignment:
| Q |
590 |
ttttgaagttccacttcctaatctttcatcaagtatgcctgtaccaacatatcttgaggggccttt |
655 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||| ||||||||| |||||||| ||||| |
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|
| T |
36946587 |
ttttgaagctccactgcctaatctttcatcaagtatgcctggaccaacataccttgagggcccttt |
36946652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 36934468 - 36934535
Alignment:
| Q |
108 |
tatttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttgga |
175 |
Q |
| |
|
|||||||| |||||||||||| ||||||| | ||||| ||||||||| |||| ||||| |||||||| |
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|
| T |
36934468 |
tatttgcaggaagaatgggaaaaatgtgtgattcatagggacataaaatcaagcaacataatgttgga |
36934535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 208
Target Start/End: Original strand, 36949483 - 36949613
Alignment:
| Q |
78 |
atagctagaggcttggcttctgcactgttatatttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttggatt |
177 |
Q |
| |
|
||||||||||| ||||| || ||| | || || |||||||||| || || || ||||| ||||||||||||||||| |||| || | |||||||||| |
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|
| T |
36949483 |
atagctagaggtttggcctcggcattattgtacctgcatgaagagtgtgagcattgtgtgctacatagagacataaaatcaagcaatgttatgttggatt |
36949582 |
T |
|
| Q |
178 |
cagagtttaatgcaaaacttggagatttcgg |
208 |
Q |
| |
|
| | || ||| |||| |||||||||||||| |
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|
| T |
36949583 |
ctaatttcaatacaaagcttggagatttcgg |
36949613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 208
Target Start/End: Original strand, 36959617 - 36959747
Alignment:
| Q |
78 |
atagctagaggcttggcttctgcactgttatatttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttggatt |
177 |
Q |
| |
|
||||||||||| ||||| || ||| | || || |||||||||| || || || ||||| ||||||||||||||||| |||| || | |||||||||| |
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|
| T |
36959617 |
atagctagaggtttggcctcggcattattgtacctgcatgaagagtgtgagcattgtgtgctacatagagacataaaatcaagcaatgttatgttggatt |
36959716 |
T |
|
| Q |
178 |
cagagtttaatgcaaaacttggagatttcgg |
208 |
Q |
| |
|
| | || ||| |||| |||||||||||||| |
|
|
| T |
36959717 |
ctaatttcaatacaaagcttggagatttcgg |
36959747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 175
Target Start/End: Original strand, 47871573 - 47871658
Alignment:
| Q |
90 |
ttggcttctgcactgttatatttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttgga |
175 |
Q |
| |
|
|||||||| ||| |||| ||| | ||||||||||||||||||||||| | ||||||||||||||| | || ||||| |||||||| |
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|
| T |
47871573 |
ttggcttcggcattgttgtatcttcatgaagaatgggaacaatgtgtgattcatagagacataaaatccagcaacattatgttgga |
47871658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 299 - 358
Target Start/End: Complemental strand, 3054491 - 3054432
Alignment:
| Q |
299 |
aggaagagctagtaaagaaacagacgtgtatagttttggtattgttgctttagagatagc |
358 |
Q |
| |
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|||||| |||||||||||| | ||| ||||||||||||| ||||||||||| ||| |||| |
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|
| T |
3054491 |
aggaagggctagtaaagaatctgacatgtatagttttggaattgttgctttggagctagc |
3054432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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