View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_high_24 (Length: 459)
Name: NF9011_high_24
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 13 - 452
Target Start/End: Original strand, 35916415 - 35916854
Alignment:
| Q |
13 |
catcactcaaaactatcttttggggatgcacctccttcacaacaccccgcataagacaaactccagactgatacaaaaattgaatgtcttagtctcatgt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35916415 |
catcactcaaaactatcttttggggatgcacctccttcacaacaccccgcataagacaaactccagactgatacaaaaattgaatgtcttagtctcatgt |
35916514 |
T |
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| Q |
113 |
ataaacttgacagttcatcattgaagattggtatatacatgatcaaaactcaaaaagtttacctttgtcaagtgcttcgttgcatactgtcgaaggccaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35916515 |
ataaacttgacagttcatcattgaagattggtatatacatgatcaaaactcaaaaggtttacctttgtcaagtgcttcgtagcatactgtcgaaggccaa |
35916614 |
T |
|
| Q |
213 |
catcaaaggatgaaagtatctcatttgcctaattatgaaaagttacacacagtggttaagtacacggttaatatatttaacaacctcagcacacaaaata |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35916615 |
catcaaaggatgaaagtatctcatttgcctaattatgaaaagttacacacagtggttaagtacgtggttaatatatttaacaacctcagcacacaaaata |
35916714 |
T |
|
| Q |
313 |
gacttcaatatataaattagatacctcaatgagtgtgacatgaatgtaatctttgacatgagtatagcgctcacgaacatctctagtgatgaaatcactc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35916715 |
gacttcaatatataaattagatacctcaatgagtgtgacatgaatgtaatctttgacatgagtatagcgctcacgaacatctctagtgatgaaatcactc |
35916814 |
T |
|
| Q |
413 |
aattcgccactaaattccactcctgtaggaccaccaccaa |
452 |
Q |
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| T |
35916815 |
aattcaccactaaattccactcctgtaggaccacctccaa |
35916854 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 447
Target Start/End: Original strand, 30218435 - 30218514
Alignment:
| Q |
368 |
acatgagtatagcgctcacgaacatctctagtgatgaaatcactcaattcgccactaaattccactcctgtaggaccacc |
447 |
Q |
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||||||| ||| | || |||||||||||| |||| |||||||| | ||| ||||||||||| ||||| ||||||||||| |
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| T |
30218435 |
acatgagcatatctctgacgaacatctctcatgataaaatcactaagttcaccactaaattcaactcccgtaggaccacc |
30218514 |
T |
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