View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9011_high_3 (Length: 809)
Name: NF9011_high_3
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 7 - 339
Target Start/End: Complemental strand, 36903180 - 36902848
Alignment:
| Q |
7 |
gaagcagagaggaagacattgaatgcaggattgccttctaatactggtctaccctcagttgttccgccaggtactgcacttgttgtggtgaaggaagcac |
106 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36903180 |
gaagcaaagaggaagacattgaatgcaggattgccttctaatactggtctaccctcagttgttccgccaggtactgcacttgttgtggtgaaggaagcac |
36903081 |
T |
|
| Q |
107 |
cagcgacaagcgcggctacaaccgagcaggaatctgctgtgttttttagccattcattgctgtcttttataagaccttcatgtgattccttgaagatatt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36903080 |
cagcgacaagcgcggctacaaccgagcaggaatctgctgtgttttttagccattcattgctgtcttttataagaccttcatgtgattccttgaagatatt |
36902981 |
T |
|
| Q |
207 |
ttcagctgttttgcctttgttgttgcttgtcaaatgtaagtgttctggcacaaggcttttgatatactgctccgaggtgggnnnnnnngcaaatggatca |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36902980 |
ttcagctgttttgcctttgttgttgcttgtcaaatgtaagtgttctggcacaaggcttttgatatactgctccgaggtgggaaaaaaagcaaatggatca |
36902881 |
T |
|
| Q |
307 |
acatatacaaacatgttcatttgaaagagattc |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
36902880 |
acatatacaaacatgttcatttgaaagagattc |
36902848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 383 - 598
Target Start/End: Complemental strand, 36902809 - 36902592
Alignment:
| Q |
383 |
cgatctcctaagttataaatgtcagacacattaataagaattttcagttctgttgtttggtcccttagcttacaaaagttaaacactttcatcatttctg |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36902809 |
cgatctcctaagttataaatgtcagacacattaataagaattttcagttctgttgtttggtcccttagcttacaaaagctaaacactttcatcatttctg |
36902710 |
T |
|
| Q |
483 |
tcattttttggcttaaattggtaaattttccctat--atatttccatctttttcttattgctgaataagacttttagtcaccaaaatataatggcgctta |
580 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36902709 |
tcattttttggcttaaattggtaaattttccctatatatatttccatctttttcttattgctgaataagacttttagtcaccaaaatataatggcgctta |
36902610 |
T |
|
| Q |
581 |
caaaacattttacgaact |
598 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
36902609 |
caaaacattttacgaact |
36902592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 658 - 792
Target Start/End: Complemental strand, 36902532 - 36902398
Alignment:
| Q |
658 |
acttaaggaagcaaagtcaaacctgaaaataacttaaacaccaaaaagtgtagttaagtcaaatttatactatagcttttgcttcaaggaaatttctcaa |
757 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36902532 |
acttaaggaagcaaagtcaaacctgaaaataacttaaacaccaaaaagtgtagttaagtcaaatttatactatagcttttgcttcaaggaaatttctcaa |
36902433 |
T |
|
| Q |
758 |
aacaagtttttgtcctcccaattataaactcatgt |
792 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
36902432 |
aacaagtttttgtcctcccaattataaactcatgt |
36902398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 36893366 - 36893103
Alignment:
| Q |
19 |
aagacattgaatgcaggattgccttctaatactggtctaccct---cagttgttccgccaggtactgcacttgttgtggtgaaggaagcaccagcgacaa |
115 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| |||||||| | ||||||| ||||||||||| || |||| ||||| |||||| ||||||| |||| |
|
|
| T |
36893366 |
aagacatcgaatgcaggcttgccttctaataccggtctaccttgatcagttgtgccgccaggtacagcgcttgctgtggcaaaggaaacaccagctacaa |
36893267 |
T |
|
| Q |
116 |
gcgcggctacaaccgagcaggaatctgctgtgttttttagccattcattgctgtcttttataagaccttcatgtgattccttgaagatattttcagctgt |
215 |
Q |
| |
|
| || | |||||| |||||||| || | ||||| |||||||||||| | ||||||||||||||||||| |||| || |||||| || | | | ||| |
|
|
| T |
36893266 |
gggcagatacaacagagcaggattccgatgtgtcttttagccattcgctactgtcttttataagacctttgtgtgttttcttgaaaatttctcttgatgt |
36893167 |
T |
|
| Q |
216 |
tttgcctttgttgttgcttgtcaaatgtaagtgttctggcacaaggcttttgatatactgctcc |
279 |
Q |
| |
|
|||||| || ||||| || | ||| ||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
36893166 |
tttgccactgctgttgtttctgaaaatgaagtgttgtggcacaaggcttttgatgtactgctcc |
36893103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 36883166 - 36883095
Alignment:
| Q |
213 |
tgttttgcctttgttgttgcttgtcaaatgtaagtgttctggcacaaggcttttgatatactgctccgaggt |
284 |
Q |
| |
|
||||||||| |||||||||||| | || | ||||||| ||| |||||||||||||||||||||||| |||| |
|
|
| T |
36883166 |
tgttttgcccttgttgttgcttctaaagtagaagtgttgtggtacaaggcttttgatatactgctccaaggt |
36883095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University