View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9011_high_34 (Length: 408)
Name: NF9011_high_34
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_high_34 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 38197211 - 38197601
Alignment:
| Q |
1 |
attaacacttctcttcctgctttggataaatgcttactcgaccattgttgtattttcctccaaactttgtctctcagatatccaaaaattgctttcttgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
38197211 |
attaacacttctcttcctgctttggataaatgcttacccgaccattgttgtattttcctccaaactatgtctctcagatatccaaaaattgatttcttgt |
38197310 |
T |
|
| Q |
101 |
tacgcgccccaccatggatggcatgcccaaatacttcctgtttcccataccttccgacacttgaaggatattcttcacatctattctgtccgcctcaggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38197311 |
tacgcgccccaccatggatggcatgcccaaatacttcctgtttcccataccttccgacacttgaaggatattcttcacatctattctgtccgcctcaggt |
38197410 |
T |
|
| Q |
201 |
gtatttttgctgaa-cnnnnnnnctgatttttgatagttgatggcttgtccggatgcatgctcataagcttgtaagatttcctttagtgtgtgctttccc |
299 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38197411 |
gtatttttgctgaatttttttttctgatttttgatagttgatggcttgtccggatgcatgctcataagcttgtaagatttcctttagtgtgtgctttccc |
38197510 |
T |
|
| Q |
300 |
ttatgtttgtcctgcaaaataagaaacaatcatcagcaaataataggtgtgcgaggagtggagctccccgacacaccttcactccatgaat |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38197511 |
ttatgtttgtcctgcaaaataagaaacaatcatcagcaaataataggtatgtgaggagtggagctccccgacacaccttccctccatgaat |
38197601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 310 - 390
Target Start/End: Original strand, 32757613 - 32757693
Alignment:
| Q |
310 |
cctgcaaaataagaaacaatcatcagcaaataataggtgtgcgaggagtggagctccccgacacaccttcactccatgaat |
390 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||| ||||||| || || ||||||||||||||||||||||| |||||||| |
|
|
| T |
32757613 |
cctgcaaaataagaaacagtcataagcaaataaaaggtgtgttagaagcggagctccccgacacaccttcacaccatgaat |
32757693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 378
Target Start/End: Complemental strand, 34210968 - 34210900
Alignment:
| Q |
310 |
cctgcaaaataagaaacaatcatcagcaaataataggtgtgcgaggagtggagctccccgacacacctt |
378 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||| ||| || |||||||| ||||||||||| |
|
|
| T |
34210968 |
cctgcaaaacaaaaaacaatcatcagcaaataataggtgtgtgagaagcggagctcctcgacacacctt |
34210900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 18979861 - 18979926
Alignment:
| Q |
310 |
cctgcaaaataagaaacaatcatcagcaaataataggtgtgcgaggagtggagctccccgacacac |
375 |
Q |
| |
|
||||||||| || |||||||||||| ||||||||||||||| ||| || |||||||| |||||||| |
|
|
| T |
18979861 |
cctgcaaaacaaaaaacaatcatcatcaaataataggtgtgtgagaagcggagctcctcgacacac |
18979926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 390
Target Start/End: Original strand, 6509997 - 6510075
Alignment:
| Q |
312 |
tgcaaaataagaaacaatcatcagcaaataataggtgtgcgaggagtggagctccccgacacaccttcactccatgaat |
390 |
Q |
| |
|
||||||| | ||||||||| ||||||||||| ||||||| ||||| | | ||||| ||||||| |||||| |||||||| |
|
|
| T |
6509997 |
tgcaaaaaatgaaacaatcgtcagcaaataaaaggtgtgtgaggattagtgctcctcgacacaacttcacaccatgaat |
6510075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 378
Target Start/End: Original strand, 31978707 - 31978769
Alignment:
| Q |
316 |
aaataagaaacaatcatcagcaaataataggtgtgcgaggagtggagctccccgacacacctt |
378 |
Q |
| |
|
||||||||||||||| | ||||||||||| ||| | ||| ||||||||||| | ||||||||| |
|
|
| T |
31978707 |
aaataagaaacaatcgttagcaaataataagtgcgtgagaagtggagctcctctacacacctt |
31978769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University