View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_high_40 (Length: 345)
Name: NF9011_high_40
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_high_40 |
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Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 9832591 - 9832919
Alignment:
| Q |
1 |
tctaactacgaaacttctgtgtttatgtgcattgatcagccactacattgtccctgaattgggaccagatgtgaaattcacttatgcttctcacaaggca |
100 |
Q |
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| T |
9832591 |
tctaactacgaaacttcggtatttatgtgcattgatcagccactacattgtccccgaattgggacctgatgtgaaattcacttatgcttctcacaaagca |
9832690 |
T |
|
| Q |
101 |
gtgaatgaatacaaggaagccaaggcggtaagcatttaaagtcatttgcgtacatttcatttttcaggacaagttctgatgttggtttttgtgtgggatg |
200 |
Q |
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| T |
9832691 |
gtgaatgaatacaaggaagccaaggcggtaagcatttaaagtcatttgcgtacatttcatttttcaggaaaagttctgatgttggtttttgtgtgggatg |
9832790 |
T |
|
| Q |
201 |
ttttcatgtgtttatctatctctacattgtccctgaatattaaatttttctttcagcttggagtcgatactattccagtcctcgttggcccagtatcata |
300 |
Q |
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| T |
9832791 |
ttttcatgtgtttatctatctctacattgtccctgaatattaaatttttctttcagcttggagtcgatactattccagtcctcgttggcccagtatcata |
9832890 |
T |
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| Q |
301 |
cttgttgctctccaagcttgctaacggtg |
329 |
Q |
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| T |
9832891 |
cttgttgctctccaagcttgctaacggtg |
9832919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 132
Target Start/End: Original strand, 35945558 - 35945653
Alignment:
| Q |
37 |
cagccactacattgtccctgaattgggaccagatgtgaaattcacttatgcttctcacaaggcagtgaatgaatacaaggaagccaaggcggtaag |
132 |
Q |
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| T |
35945558 |
cagccatttcattgttcctgaattgggtccagatgttaaattctcctatgcatcacacaaggcagtggatgaatacaacgaggccaaagctgtaag |
35945653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 315
Target Start/End: Complemental strand, 33469500 - 33469429
Alignment:
| Q |
244 |
atttttctttcagcttggagtcgatactattccagtcctcgttggcccagtatcatacttgttgctctccaa |
315 |
Q |
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| T |
33469500 |
atttgtcttacagcttggagtagacactgttcccgttcttgttggccctgtttcatacttgttgctctccaa |
33469429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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