View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_high_46 (Length: 313)
Name: NF9011_high_46
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_high_46 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 36941739 - 36941430
Alignment:
| Q |
1 |
tttcggtttagcaaggtttgtggatcatgcaaaaggtgggcaaaccacagctttagcagggactatgggatacatggcacctgaatgtgctaccacagga |
100 |
Q |
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| T |
36941739 |
tttcggtttagcaaggtttgtggatcatgcaaaaggtggacaaaccacagctttagcagggactatgggatacatggctcctgaatgtgctaccacagga |
36941640 |
T |
|
| Q |
101 |
agggccagtaaagaaaccgatgtgtatagttttggaattgttgctttagagatagcttgtggaagaaaaccaataattaacgctcaagaaaacgaaataa |
200 |
Q |
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| T |
36941639 |
agggccagtaaagaaaccgatgtgtatagttttggaattgttgctttagagatagcttgtggaagaaaaccaataattaatgctcaagaaaatgaaataa |
36941540 |
T |
|
| Q |
201 |
acattgttgaatgggtttgggggctatattgaagagggagaattgttgaagcagtagatccaagactagatggagattatgaagaggatcaaatcaagtg |
300 |
Q |
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| T |
36941539 |
acattgtggaatgggtttgggggctatatggaagagggagaattgttgaagcagtagatccaagactagatggagattatgaagaggaacaaatcaagtg |
36941440 |
T |
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| Q |
301 |
catgatgatt |
310 |
Q |
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|||||||||| |
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| T |
36941439 |
catgatgatt |
36941430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 36939379 - 36939694
Alignment:
| Q |
1 |
tttcggtttagcaaggtttgtggatcatgcaaaaggtgggcaaaccacagctttagcagggactatgggatacatggcacctgaatgtgctaccacagga |
100 |
Q |
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| T |
36939379 |
tttcggtttagcaaggtttgtggaccatgcaaaaggtgcacaaactacagctttagcagggactttgggatacatggctcctgaatgtgctaccacagga |
36939478 |
T |
|
| Q |
101 |
agggccagtaaagaaaccgatgtgtatagttttggaattgttgctttagagatagcttgtggaagaaaaccaataa------ttaacgctcaagaaaacg |
194 |
Q |
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| T |
36939479 |
agagctagtaaagaaacagacgtgtatagttttggtattgttgctttagagatagcttgcggaagaaaacctataataaaccttaaggctcaagaaaatg |
36939578 |
T |
|
| Q |
195 |
aaataaacattgttgaatgggtttgggggctatattgaagagggagaattgttgaagcagtagatccaagactagatggagattatgaagaggatcaaat |
294 |
Q |
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| T |
36939579 |
aaatacatattgtggagtgggtttgggggctatatggaagagggaaaattcttgaagcagtagatccaaaactagatggagattttgaacaagaacaaat |
36939678 |
T |
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| Q |
295 |
caagtgcatgatgatt |
310 |
Q |
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| T |
36939679 |
caagtgcatgatgatt |
36939694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 36949685 - 36949775
Alignment:
| Q |
78 |
cacctgaatgtgctaccacaggaagggccagtaaagaaaccgatgtgtatagttttggaattgttgctttagagatagcttgtggaagaaa |
168 |
Q |
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| T |
36949685 |
cacctgaagctgctacaagaggaaaggctagtagagaatctgatgtatacagttttggagttgttgctttggaaatagcttgtggtagaaa |
36949775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 36959819 - 36959909
Alignment:
| Q |
78 |
cacctgaatgtgctaccacaggaagggccagtaaagaaaccgatgtgtatagttttggaattgttgctttagagatagcttgtggaagaaa |
168 |
Q |
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| T |
36959819 |
cacctgaagctgctacaagaggaaaggctagtagagaatctgatgtatacagttttggagttgttgctttggaaatagcttgtggtagaaa |
36959909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 3054491 - 3054432
Alignment:
| Q |
97 |
aggaagggccagtaaagaaaccgatgtgtatagttttggaattgttgctttagagatagc |
156 |
Q |
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| T |
3054491 |
aggaagggctagtaaagaatctgacatgtatagttttggaattgttgctttggagctagc |
3054432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 154
Target Start/End: Complemental strand, 28294281 - 28294221
Alignment:
| Q |
94 |
cacaggaagggccagtaaagaaaccgatgtgtatagttttggaattgttgctttagagata |
154 |
Q |
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| T |
28294281 |
cacaggtagggcaagtaaagagtcagatgtgtatagttttgggatagttgctttggagata |
28294221 |
T |
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