View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_high_60 (Length: 244)
Name: NF9011_high_60
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_high_60 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 34840233 - 34840444
Alignment:
| Q |
18 |
catcagttggttgagaatgctgacgagtgtatggtgcttgataatgaggctttgtacgatatctgcttcagaacacttaaattgactactcctagctgtg |
117 |
Q |
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| T |
34840233 |
catcagttggttgagaatgctgacgagtgtatggtgcttgataatgaggctttgtacgatatctgcttcagaacacttaaattgactactcctagctgtg |
34840332 |
T |
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| Q |
118 |
agtattgtttgaattttaagtgatctagatctattatttgtttttcatcactaagctatattagtaacatgttaattgttcattgatttgtttgatttga |
217 |
Q |
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| T |
34840333 |
agtattgtttgaattttaagtgatctagatctattatttttttttcatcactaagctagattagtaacatgttaattgttcattgatttgtttgatttga |
34840432 |
T |
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| Q |
218 |
agagtgattagt |
229 |
Q |
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| T |
34840433 |
agagtgattagt |
34840444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 217
Target Start/End: Original strand, 3738932 - 3739074
Alignment:
| Q |
75 |
gatatctgcttcagaacacttaaattgactactcctagctgtgagtattgtttgaattttaagtgatctagatctattatttgtttttcatcactaagct |
174 |
Q |
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| T |
3738932 |
gatatttgcttcagggctcttaaattgactactactagctgtgagtattcttctctttggtcgtgatctagatctcattttcgttgttcatcactagggt |
3739031 |
T |
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| Q |
175 |
atattagtaacatgttaattgttcattgatttgtttgatttga |
217 |
Q |
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| T |
3739032 |
atatcagtaacatgttaattgttagttgatttgtttggtttga |
3739074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 45453197 - 45453104
Alignment:
| Q |
27 |
gttgagaatgctgacgagtgtatggtgcttgataatgaggctttgtacgatatctgcttcagaacacttaaattgactactcctagctgtgagt |
120 |
Q |
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| T |
45453197 |
gttgagaatgctgatgaatgcatggttctggataatgaagctctctatgatatttgcttccgcacccttaaactcactactccaagctgtgagt |
45453104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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