View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_high_66 (Length: 216)
Name: NF9011_high_66
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_high_66 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 23 - 200
Target Start/End: Original strand, 5266182 - 5266359
Alignment:
| Q |
23 |
tatttatcttcttgaatatttctcaaccacgtcctgaaataaaatacaccggaaggggctaactttcatcagacatatcacgatgtggaagatttaatag |
122 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
5266182 |
tatttatcttcttgagtattcctcaaccacgtcctgaaataaaatacaccggaaagggctaactttcatctgacatgtcacgatgtggaagatttaatag |
5266281 |
T |
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| Q |
123 |
gctaggaatatgatcattttctcttcaacgagagaggagatggaggatattgtagaaggtataaatgaacctcttaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5266282 |
gctaggaatatgatcattttctcttcaacgagagaggagatggaggatattgtagaaggtataaatgaacctcttaga |
5266359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 42940787 - 42940759
Alignment:
| Q |
1 |
atacaatttgggacggagggagtatttat |
29 |
Q |
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| T |
42940787 |
atacaatttgggacggagggagtatttat |
42940759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 200
Target Start/End: Complemental strand, 16717207 - 16717029
Alignment:
| Q |
23 |
tatttatcttcttgaatatttctcaaccacgtcctgaaataaaatacaccggaaggggctaactttcatcagacatatcacgatgtggaagatttaatag |
122 |
Q |
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||||| |||| |||| |||||||||||| ||| || | |||| ||||| || || |||||||||||| | || |||| || ||||||||| || |
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| T |
16717207 |
tatttctctttttgagtatttctcaaccttgtcatggagcaaaaaacacccgacggagctaactttcatttggtatgtcacaatacggaagatttgggag |
16717108 |
T |
|
| Q |
123 |
gctaggaatatgatcattttctcttcaacgagagaggagatggaggatattgtagaaggtat-aaatgaacctcttaga |
200 |
Q |
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| T |
16717107 |
gttaggaataagatcattttctttttaaggagagtggagatggaggatattgtagaaggaataaaattaacctcttaga |
16717029 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 4898387 - 4898417
Alignment:
| Q |
1 |
atacaatttgggacggagggagtatttatct |
31 |
Q |
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| T |
4898387 |
atacaatttgggacggagggagtatttatct |
4898417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 4945781 - 4945811
Alignment:
| Q |
1 |
atacaatttgggacggagggagtatttatct |
31 |
Q |
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|
| T |
4945781 |
atacaatttgggacggagggagtatttatct |
4945811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 12363881 - 12363909
Alignment:
| Q |
1 |
atacaatttgggacggagggagtatttat |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
12363881 |
atacaatttgggacggagggagtatttat |
12363909 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 40172143 - 40172171
Alignment:
| Q |
1 |
atacaatttgggacggagggagtatttat |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
40172143 |
atacaatttgggacggagggagtatttat |
40172171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 31602973 - 31603001
Alignment:
| Q |
1 |
atacaatttgggacggagggagtatttat |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
31602973 |
atacaatttgggacggagggagtatttat |
31603001 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 15497864 - 15497836
Alignment:
| Q |
1 |
atacaatttgggacggagggagtatttat |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
15497864 |
atacaatttgggacggagggagtatttat |
15497836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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