View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_106 (Length: 309)
Name: NF9011_low_106
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_106 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 29 - 290
Target Start/End: Complemental strand, 41812100 - 41811839
Alignment:
| Q |
29 |
agcttacagtatcgattccagatatcacactgttgaaccactctttagtacttgtgatagtttcatgaaaagcttcattgtcagtagcaatcctgtcttc |
128 |
Q |
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| T |
41812100 |
agcttatagtatctatcccagatatcatactgttgacacactttttaatacttgtgatagtttcatgaaaagcttcattgtcagtagcaatcctgtcttc |
41812001 |
T |
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| Q |
129 |
aagtgctctctgaacttgctgaaacttctcttccaactttctaaagctctcttcctcttggtttgacaggcaaagctttacctcaagattcatgacattt |
228 |
Q |
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| T |
41812000 |
aagtgctctctgaacttgctgaaacttttcttccacctttctaaagctctcttcctcttggtttgacaggcaaagctttacctcaagattcatgacattt |
41811901 |
T |
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| Q |
229 |
tcaagcaaagagctgacctcatctcctttctcttccaggtctcttttcagttcttcaacttg |
290 |
Q |
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| T |
41811900 |
tcaagcaaagagctgacctcatctcctttctcttccaggtctcttttcagttcttcaacttg |
41811839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 41805281 - 41805194
Alignment:
| Q |
25 |
tttaagcttacagtatcgattccagatatcacactgttgaaccactctttagtacttgtgatagtttcatgaaaagcttcattgtcag |
112 |
Q |
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| T |
41805281 |
tttaagcttacagtatcgattccagatatcacactgttgaaccactctttagtacttgtgatagtttcatgaaaagcttcattgtcag |
41805194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 186 - 290
Target Start/End: Complemental strand, 41798673 - 41798569
Alignment:
| Q |
186 |
ttggtttgacaggcaaagctttacctcaagattcatgacattttcaagcaaagagctgacctcatctcctttctcttccaggtctcttttcagttcttca |
285 |
Q |
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| T |
41798673 |
ttggtttgacaggcgaagctttacctcaagattcctgacattctcaaacaaagtgctaacctcatctcctttctcttccaggtctcttttcaggtcttca |
41798574 |
T |
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| Q |
286 |
acttg |
290 |
Q |
| |
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||||| |
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| T |
41798573 |
acttg |
41798569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 41798781 - 41798708
Alignment:
| Q |
111 |
agtagcaatcctgtcttcaagtgctctctgaacttgctgaaacttctc-ttccaactttctaaagctctcttcct |
184 |
Q |
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| T |
41798781 |
agtagcaatcctgtcttcaagttctctctgaacttgctgaaac-tctcgttccgcctttctaaagctctcttcct |
41798708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 41798877 - 41798804
Alignment:
| Q |
36 |
agtatcgattccagatatcacactgttgaaccactctttagtacttgtgatagtttcatgaaaagcttcattgt |
109 |
Q |
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| T |
41798877 |
agtatctatcccagatatcacactgttgacacacactttaacacttgtgatagtttcatgaaaagcttcattgt |
41798804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 290
Target Start/End: Complemental strand, 41805066 - 41804962
Alignment:
| Q |
186 |
ttggtttgacaggcaaagctttacctcaagattcatgacattttcaagcaaagagctgacctcatctcctttctcttccaggtctcttttcagttcttca |
285 |
Q |
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||||||||||| || ||||||| || |||||||| |||||| ||||||||| || ||| | || |||||||| ||||||||| ||||||| |||||| |
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| T |
41805066 |
ttggtttgacaagcgaagcttttccccaagattctcgacattctcaagcaaaaaggtgatgttatttcctttcttgtccaggtcttttttcaggtcttca |
41804967 |
T |
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| Q |
286 |
acttg |
290 |
Q |
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||||| |
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| T |
41804966 |
acttg |
41804962 |
T |
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