View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_109 (Length: 307)
Name: NF9011_low_109
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_109 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 10839185 - 10839474
Alignment:
| Q |
1 |
gtatgttttatgtttgtgtttttcgtatctgttttctcttgaaccagggttgttgttctatcataatctcatctaacgaaaaagactggttgttgattta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10839185 |
gtatgttttatgtttgtgtttttcgtatctgttttctcttgaaccagggttgttgttctatcataatctcatctaacgaaaaagactggttgttgattta |
10839284 |
T |
|
| Q |
101 |
gaagcgaatcttgtaaacttaaaattgtacatatatgatgagactaacagtaatttgtcggtatttgcagcaagttctactttgcaagaacagggtggct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10839285 |
gaagcgaatcttgtaaacttaaaattgtacatatatgatgagactaacagtaatttttcggtatttgcagcaagttctactttgcaagaacagggtggct |
10839384 |
T |
|
| Q |
201 |
aaccattgcacttttaccaaccccaattgcattcatcttgctggcttcatcggaaagtgctatggcacttaataccgggactgcactaat |
290 |
Q |
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| T |
10839385 |
aaccattgcacttttaccaaccccaattgcattcatcttgctggcttcatcggaaagtgctatggcacttaataccgggactgcactaat |
10839474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 30348791 - 30348664
Alignment:
| Q |
165 |
ttgcagcaagttctactttgcaagaacagggtggctaaccattgcacttttaccaaccccaattgcattcatcttgctggcttcatcggaaagtgctatg |
264 |
Q |
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|||||| |||||||||||||||||||| || ||||| ||||||||||| ||||||| |||||||| ||| ||||||| || |||| || ||| || || |
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| T |
30348791 |
ttgcagtaagttctactttgcaagaactggttggctctccattgcacttataccaacaccaattgcgttcttcttgcttgccgcatcagacagttctctg |
30348692 |
T |
|
| Q |
265 |
gcacttaataccgggactgcactaattg |
292 |
Q |
| |
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| T |
30348691 |
gcactgcatactggaactgcactaattg |
30348664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 5055881 - 5055926
Alignment:
| Q |
15 |
tgtgtttttcgtatctgttttctcttgaaccagggttgttgttcta |
60 |
Q |
| |
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|||||||||||||||| ||| || |||||||||||||||||||||| |
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| T |
5055881 |
tgtgtttttcgtatctttttacttttgaaccagggttgttgttcta |
5055926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 5455961 - 5456010
Alignment:
| Q |
11 |
tgtttgtgtttttcgtatctgttttctcttgaaccagggttgttgttcta |
60 |
Q |
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|||||||||||||| |||||||||||| | |||||| |||||||||||| |
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| T |
5455961 |
tgtttgtgtttttcatatctgttttctttagaaccaaagttgttgttcta |
5456010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 6263013 - 6263062
Alignment:
| Q |
11 |
tgtttgtgtttttcgtatctgttttctcttgaaccagggttgttgttcta |
60 |
Q |
| |
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|||||| ||||||||||||| |||||| |||||||||| ||||||||||| |
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| T |
6263013 |
tgtttgcgtttttcgtatctattttcttttgaaccaggattgttgttcta |
6263062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 1498034 - 1498075
Alignment:
| Q |
19 |
tttttcgtatctgttttctcttgaaccagggttgttgttcta |
60 |
Q |
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| T |
1498034 |
tttttcgtatctgttttcttttgaaccagggttactgttcta |
1498075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 29820492 - 29820451
Alignment:
| Q |
19 |
tttttcgtatctgttttctcttgaaccagggttgttgttcta |
60 |
Q |
| |
|
||||| ||||||||||||| || ||||||||||||||||||| |
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| T |
29820492 |
ttttttgtatctgttttcttttaaaccagggttgttgttcta |
29820451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 33717240 - 33717199
Alignment:
| Q |
19 |
tttttcgtatctgttttctcttgaaccagggttgttgttcta |
60 |
Q |
| |
|
|||||||||||||||| || |||||| ||||||||||||||| |
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| T |
33717240 |
tttttcgtatctgtttacttttgaactagggttgttgttcta |
33717199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 29363189 - 29363239
Alignment:
| Q |
11 |
tgtttgtgtttt-tcgtatctgttttctcttgaaccagggttgttgttcta |
60 |
Q |
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|||||||||||| ||||||| |||| || |||||||||||||||||||||| |
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| T |
29363189 |
tgtttgtgttttttcgtatccgtttacttttgaaccagggttgttgttcta |
29363239 |
T |
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