View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9011_low_112 (Length: 304)

Name: NF9011_low_112

Description: NF9011

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF9011_low_112

[»] chr2 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 155; E-Value: 3e-82

Query Start/End: Original strand, 41 - 296

Target Start/End: Complemental strand, 394490 - 394232

Alignment:

Q	41	ggctaattatgtttgcaaagtaacaaaatagaaatta----tctgtaccaaaaaata-ttaaaaatagaaattatattcattttttgttggtacaaatta	135	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	394490	ggctaattatgtttgcaaagtaacaaaatagaaattaattatttgtaccaaaaaaaaattaaaaatagaaattatattcattttttgttggtacaaatta	394391	T

Q	136	gtgataatgtcaatattacataaataggtttgtgaggttaaaactattatggaataaaattcatcattttcttnnnnnnnnggatctatctaattctttt	235	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|
T	394390	gtgataatgtcaatattacataaataggtttgtacggttaaaactattatgaaataaaattcatctttttctt-aaaaaaaggatctacctaatcctttt	394292	T

Q	236	acatgatcgaaaacctcaaaacacgtcaaaccacaaaaccaccaacacccctataacacca	296	Q
		\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|
T	394291	atatgatcg-aaacctcaaaacacgtcaaaccacaaaacaaccaacacccctatcacacca	394232	T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 29; E-Value: 0.0000004

Query Start/End: Original strand, 232 - 280

Target Start/End: Original strand, 11449661 - 11449709

Alignment:

Q	232	ttttacatgatcgaaaacctcaaaacacgtcaaaccacaaaaccaccaa	280	Q
		\|\|\|\|\|\|\| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	11449661	ttttacacgattgagaacctcaaaacacatcaagccacaaaaccaccaa	11449709	T

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