View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9011_low_114 (Length: 300)
Name: NF9011_low_114
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_114 |
 | |
|
| [»] scaffold0225 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 176; Significance: 8e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 9 - 280
Target Start/End: Complemental strand, 18918214 - 18917943
Alignment:
| Q |
9 |
ggacatcatcagccaatgtctgtttatctccctgaagcgccaaccaatttgtccaatcattattaacagaaatttgagatccattaacagaagagctatc |
108 |
Q |
| |
|
|||||||||||| ||| |||| ||||||||| ||||| | |||||| |||||| | ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18918214 |
ggacatcatcagacaaagtctttttatctccatgaagtgtcaaccagtttgtctagtcattattaacagaaatttgagagccattaacagaagagctatc |
18918115 |
T |
|
| Q |
109 |
attagaaattaccttatcaaaggaagaatccgaaaccaccttacgtcgcctagaagtcttacgcaaagcacgtaaaacttcctttcgatcttcttcggaa |
208 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
18918114 |
attagaaattaccttatcattggaaaaatccgaaaccaccttacgtcgcctagacgtcttacgcaaagcacgtaaaactttctttcgatcttcttccgaa |
18918015 |
T |
|
| Q |
209 |
agccttgcaatacgcttcaatttcacagcacaatgtcgaatatggccaactcccttcctacgtttgctacga |
280 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| ||||| || ||| | |||||||||||||| |||||| |
|
|
| T |
18918014 |
agccttgcaatacgcttcaacttgacagcacaatggcgaatctgaccagcacccttcctacgtttactacga |
18917943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 33096150 - 33095963
Alignment:
| Q |
41 |
tgaagcgccaaccaatttgtccaatcattattaacagaaatttgagatccattaacagaagagctatcattagaaattaccttatcaaaggaagaatccg |
140 |
Q |
| |
|
||||| ||||||||||| |||| |||||||||||||| || || |||||||||||| || ||||||| ||| ||||||||||| ||| | | ||| |
|
|
| T |
33096150 |
tgaagagccaaccaattcatccagtcattattaacagacgcatgtgaaccattaacagaaaagttatcattggaatttaccttatcattggatgtacccg |
33096051 |
T |
|
| Q |
141 |
aaaccaccttacgtcgcctagaagtcttacgcaaagcacgtaaaacttcctttcgatcttcttcggaaagccttgcaatacgcttcaa |
228 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||| || | |||||| ||||||||||| |
|
|
| T |
33096050 |
gaaccaccttacgtcgcctatgagttttacgcaaagcacgtaaaacttgctttcgatcttcttctgataaccttgctatacgcttcaa |
33095963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 228
Target Start/End: Complemental strand, 22530244 - 22530064
Alignment:
| Q |
48 |
ccaaccaatttgtccaatcattattaacagaaatttgagatccattaacagaagagctatcattagaaattaccttatcaaaggaagaatccgaaaccac |
147 |
Q |
| |
|
|||||||||||| ||| || ||||| | |||| |||||| ||| ||||||| ||||||||||| ||||||||||||| | || ||||| ||||| |
|
|
| T |
22530244 |
ccaaccaatttgaccagtcgttattgagagaagattgagaaccaataacagaggagctatcattcaaaattaccttatctacatgagtctccgacaccac |
22530145 |
T |
|
| Q |
148 |
cttacgtcgcctagaagtcttacgcaaagcacgtaaaacttcctttcgatcttcttcggaaagccttgcaatacgcttcaa |
228 |
Q |
| |
|
||| ||||||| ||||||||||| ||||||||||||||||| || ||| | ||||||||||| |||||||||||||| |
|
|
| T |
22530144 |
cttttgtcgccttcttgtcttacgcaatgcacgtaaaacttccttacggtctccctcggaaagcctcgcaatacgcttcaa |
22530064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 48 - 228
Target Start/End: Original strand, 29549417 - 29549597
Alignment:
| Q |
48 |
ccaaccaatttgtccaatcattattaacagaaatttgagatccattaacagaagagctatcattagaaattaccttatcaaaggaagaatccgaaaccac |
147 |
Q |
| |
|
|||||||||| | ||| |||||||||| ||| |||||| ||| ||||| | ||||||||||| ||||||||||||| || || ||||| ||||| |
|
|
| T |
29549417 |
ccaaccaattcgaccagtcattattaatagatgattgagaaccaataacatatgagctatcattcaaaattaccttatctaaatgagtctccgacaccac |
29549516 |
T |
|
| Q |
148 |
cttacgtcgcctagaagtcttacgcaaagcacgtaaaacttcctttcgatcttcttcggaaagccttgcaatacgcttcaa |
228 |
Q |
| |
|
||| ||||||| ||||||||||| ||||||||||||||||| || ||| | ||||| ||||| |||||||||||||| |
|
|
| T |
29549517 |
cttttgtcgccttctcgtcttacgcaatgcacgtaaaacttccttacggtctccctcggatagcctcgcaatacgcttcaa |
29549597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0225 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0225
Description:
Target: scaffold0225; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 41 - 231
Target Start/End: Complemental strand, 2772 - 2582
Alignment:
| Q |
41 |
tgaagcgccaaccaatttgtccaatcattattaacagaaatttgagatccattaacagaagagctatcattagaaattaccttatcaaaggaagaatccg |
140 |
Q |
| |
|
||||| ||||||||||| |||| |||||||||||||| |||||||||||||||||||| ||||| | ||| |||||||| | ||||| ||| |
|
|
| T |
2772 |
tgaagagccaaccaattcatccagtcattattaacagacgactgagatccattaacagaagaaatatcaatggaatttaccttaactttggaagtgcccg |
2673 |
T |
|
| Q |
141 |
aaaccaccttacgtcgcctagaagtcttacgcaaagcacgtaaaacttcctttcgatcttcttcggaaagccttgcaatacgcttcaattt |
231 |
Q |
| |
|
| ||||||||||| |||||| || |||||||| ||||||||||||| ||| ||||| || || | | ||| ||||||||||||||||| |
|
|
| T |
2672 |
acaccaccttacgacgcctacgagatttacgcaatgcacgtaaaacttgcttacgatcctcctccaacaacctggcaatacgcttcaattt |
2582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 48 - 231
Target Start/End: Complemental strand, 24733980 - 24733797
Alignment:
| Q |
48 |
ccaaccaatttgtccaatcattattaacagaaatttgagatccattaacagaagagctatcattagaaattaccttatcaaaggaagaatccgaaaccac |
147 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| ||||||| ||| || ||||| ||| |
|
|
| T |
24733980 |
ccaaccaattcatccaatcattattaacagatgactgcgaaccgttaactgaagaactatcattcgaaatctccttatccttagaacaaaccgaatgcac |
24733881 |
T |
|
| Q |
148 |
cttacgtcgcctagaagtcttacgcaaagcacgtaaaacttcctttcgatcttcttcggaaagccttgcaatacgcttcaattt |
231 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||| || ||||| || ||||| | |||||||||||||||||| |
|
|
| T |
24733880 |
cttacgacgcctattcgtcttacgcaaagcacgtaaaacttctttacgatcctcctcggataattgtgcaatacgcttcaattt |
24733797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 16541590 - 16541528
Alignment:
| Q |
29 |
tgtttatctccctgaagcgccaaccaatttgtccaatcattattaacagaaatttgagatcca |
91 |
Q |
| |
|
||||||| || ||||||| ||||| | || ||||||||||||||||||||| |||||||||| |
|
|
| T |
16541590 |
tgtttatttcactgaagcaccaactagttggtccaatcattattaacagaagattgagatcca |
16541528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 16624072 - 16624134
Alignment:
| Q |
29 |
tgtttatctccctgaagcgccaaccaatttgtccaatcattattaacagaaatttgagatcca |
91 |
Q |
| |
|
||||||| || ||||||| ||||| | || ||||||||||||||||||||| |||||||||| |
|
|
| T |
16624072 |
tgtttatttcactgaagcaccaactagttggtccaatcattattaacagaagattgagatcca |
16624134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University