View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_116 (Length: 291)
Name: NF9011_low_116
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_116 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 27 - 277
Target Start/End: Original strand, 40333213 - 40333463
Alignment:
| Q |
27 |
gtacaaaagttgatttggaccttcaatgaagtgttttctcataagaaatataccgtgtaggcaaaatttgtcatttgtatcaaatcaaaattagnnnnnn |
126 |
Q |
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| T |
40333213 |
gtacagaagttgatttggaccttgaatgaagtgttttctcataagaaatatacagaggaggcaaaatttgtcatttgtgtcaaatcaaaattaggaaaaa |
40333312 |
T |
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| Q |
127 |
nntaggaagtggtaattataaacttgtcgtgtaaatctgacgacaaattttgtcgtatattttagcattttccatacatctccaaaaatgacgttcgaaa |
226 |
Q |
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| T |
40333313 |
aataggaagtggtaattacaaacttgttgtgtaaatatgacgacaaattttgtcgtgtattttagcattttgtatacatctccaaaaatgacgttcgaaa |
40333412 |
T |
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| Q |
227 |
gacatgctaccacaccacttcaacgccaacaagttcatcgcattgcctctc |
277 |
Q |
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| T |
40333413 |
gacatgctaccacaccacttcaacgccaacaagttcatcgcatcgcctctc |
40333463 |
T |
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Back To:
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Target: chr7 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 13066661 - 13066482
Alignment:
| Q |
20 |
atgacgcgtacaaaagttgatttggaccttcaatgaagtgttttctcataagaaatataccgtgtaggcaaaatttgtcatttgtatcaaatcaaaatta |
119 |
Q |
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| T |
13066661 |
atgacacgtacagaagttgatttggaccttgaatgaagtgttttctcataagaaatatacagtggaggaaaaatttgtcatttgtgtcaaatcaaaatta |
13066562 |
T |
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| Q |
120 |
gnnnnnnnntaggaagtggtaattataaacttgtcgtgtaaatctgacgacaaattttgtcgtatattttagcattttcc |
199 |
Q |
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| T |
13066561 |
ggaaaaaaataggaagtggtaattacaaacttgtcgtgtaaatctgtcgacaaattttgtcgtgtattttagcattttcc |
13066482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 26 - 202
Target Start/End: Complemental strand, 17074529 - 17074353
Alignment:
| Q |
26 |
cgtacaaaagttgatttggaccttcaatgaagtgttttctcataagaaatataccgtgtaggcaaaatttgtcatttgtatcaaatcaaaattagnnnnn |
125 |
Q |
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|||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||| |
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| T |
17074529 |
cgtacataacttgatttggaccttgaatgaagtgttttctcataagaaatatacagtggaggcataatttgtcatttgtgtcaaatcaaaattaggaaaa |
17074430 |
T |
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| Q |
126 |
nnntaggaagtggtaattataaacttgtcgtgtaaatctgacgacaaattttgtcgtatattttagcattttccata |
202 |
Q |
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| T |
17074429 |
aaatagtaagtggtaataacaaacttgtcgtgtaaatttgacgacaatttttgtcgtgtattttaacattttccata |
17074353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 17573741 - 17573917
Alignment:
| Q |
26 |
cgtacaaaagttgatttggaccttcaatgaagtgttttctcataagaaatataccgtgtaggcaaaatttgtcatttgtatcaaatcaaaattagnnnnn |
125 |
Q |
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| T |
17573741 |
cgtacataacttgatttggaccttgaatgaagtgttttctcataagaaatatacagtggaggcataatttgtcatttgtgtcaaatcaaaattaggaaaa |
17573840 |
T |
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| Q |
126 |
nnntaggaagtggtaattataaacttgtcgtgtaaatctgacgacaaattttgtcgtatattttagcattttccata |
202 |
Q |
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||| |||||||||| | ||||||||||||||||| ||||||||| ||||||||| ||||||| ||||||||||| |
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| T |
17573841 |
aaatagtaagtggtaataacaaacttgtcgtgtaaatttgacgacaatttttgtcgtgtattttaacattttccata |
17573917 |
T |
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