View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_118 (Length: 287)
Name: NF9011_low_118
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_118 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 287
Target Start/End: Original strand, 6496117 - 6496391
Alignment:
| Q |
13 |
cagagaacaatacttcagaaataggaagcaatggtaagagctgaactccaaccctacattctttatattccggtggagcaaaccaaagtccactttctct |
112 |
Q |
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| T |
6496117 |
cagagaacaatacttcagaaataggaagcaatggtaagagctgaactccaaccctacattctttatattccggtggagcaaaccaaagtccactttctct |
6496216 |
T |
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| Q |
113 |
cttgttggaccatagaaatcccatgatccgattcgctttggtaaattcttcggcatatagttttcctccttcttttatatgccaccacatttgagccgct |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6496217 |
cttgttggaccatagaaatcccatgatccgattcgcttttgtaaattcttcggcatatagttttcctccttcttttatatgccaccacatttgagccgct |
6496316 |
T |
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| Q |
213 |
ttaattccaaaggctaaaagtgtcgatccaaggataaaaatgtctgcgtcgttgtacgccaaacccatcaatgct |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6496317 |
ttaattccaaaggctaaaagtgtcgatccaaggataaaaaggtctgcgtcgttgtacgccaaacccatcaatgct |
6496391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 287
Target Start/End: Complemental strand, 6462555 - 6462281
Alignment:
| Q |
13 |
cagagaacaatacttcagaaataggaagcaatggtaagagctgaactccaaccctacattctttatattccggtggagcaaaccaaagtccactttctct |
112 |
Q |
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| T |
6462555 |
cagagaacaatacttcagaaataggaaccaatggtaagagctgaattccaagtctacattctctatattcaggtggagcaaaccaaagtccactttctct |
6462456 |
T |
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| Q |
113 |
cttgttggaccatagaaatcccatgatccgattcgctttggtaaattcttcggcatatagttttcctccttcttttatatgccaccacatttgagccgct |
212 |
Q |
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| T |
6462455 |
cttgttagaccatagaaatcccatgatcctgttctcttttgtaaactcttctgcatatagtttatctccttcttttatatgccaccacatttgagctgct |
6462356 |
T |
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| Q |
213 |
ttaattccaaaggctaaaagtgtcgatccaaggataaaaatgtctgcgtcgttgtacgccaaacccatcaatgct |
287 |
Q |
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| T |
6462355 |
ttaattccaaaagctaatagtgtcgatccattgataaaaaggtctgcgtcgttatatgccaaacccatcagtgct |
6462281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 6473772 - 6473586
Alignment:
| Q |
18 |
aacaatacttcagaaataggaagcaatggtaagagctgaactccaaccctacattctttatattccggtggagcaaaccaaagtccactttctctcttgt |
117 |
Q |
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| T |
6473772 |
aacaaaacttcagaaataggaatcaatggtaggagctgaattccaagcctacattctttccatgcagccggagcaaaccataatccactgtctctcttgt |
6473673 |
T |
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| Q |
118 |
tggaccatagaaatcccatgatccgattcgctttggtaaattcttcggcatatagttttcctccttcttttatatgccaccacattt |
204 |
Q |
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| T |
6473672 |
tagaccatagaactcccatcatcctattctcttttgtaaaatcttcctcatagagattctctccttcttttacatgccaccacattt |
6473586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 6464790 - 6464882
Alignment:
| Q |
26 |
ttcagaaataggaagcaatggtaagagctgaactccaaccctacattctttatattccggtggagcaaaccaaagtccactttctctcttgtt |
118 |
Q |
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| T |
6464790 |
ttcagaaattggaagcaatggtaagagctgaatcccaagcctacattctttccattcaggaggagcaaaccataatccactgtctctcttgtt |
6464882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 6525815 - 6525926
Alignment:
| Q |
13 |
cagagaacaatacttcagaaataggaagcaatggtaagagctgaactccaaccctacattctttatattccggtggagcaaaccaaagtccactttctct |
112 |
Q |
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|||||||||| ||||||||||| |||||||||||||||||||||| |||| |||||||||||| |||| | |||| ||||||| | ||||| ||||| |
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| T |
6525815 |
cagagaacaagacttcagaaattggaagcaatggtaagagctgaatcccaagcctacattctttccattcagctggaccaaaccataaaccactgtctct |
6525914 |
T |
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| Q |
113 |
cttgttggacca |
124 |
Q |
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||||| ||||| |
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| T |
6525915 |
tttgttcgacca |
6525926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 6456952 - 6457012
Alignment:
| Q |
148 |
ctttggtaaattcttcggcatatagttttcctccttcttttatatgccaccacatttgagc |
208 |
Q |
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| T |
6456952 |
ctttggaaaattcttcagcataaagtttatctccgccttttatatgccaccacatttgagc |
6457012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 46382869 - 46382908
Alignment:
| Q |
18 |
aacaatacttcagaaataggaagcaatggtaagagctgaa |
57 |
Q |
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| T |
46382869 |
aacaagacttcagaaataggaaacaatggtaagagctgaa |
46382908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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