View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_12 (Length: 774)
Name: NF9011_low_12
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-178; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 399 - 759
Target Start/End: Complemental strand, 36330006 - 36329645
Alignment:
| Q |
399 |
atatttcgtttgcttctccctctatttctcagcgttcttaactcttttacccttttatcaaattatgttcaaaattttagcagcatggatgaataaaata |
498 |
Q |
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| T |
36330006 |
atatttcgtttgcttctccctctatttctcagcgttcttaagtcttttacccttttatcaaattatgttgaaaattttagcagcatggatgaataaaatg |
36329907 |
T |
|
| Q |
499 |
tggactttaatttcacacacattcaattactactgccaaaagtgatgtatatattcttgatacattatgagatgacgtagtagacaagccataaccctct |
598 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36329906 |
tggactttaatttcacacacattcaattactactgccaaaagtgatgtatatattcttgatacattatgagatgacgtagtagacaagccataaccctct |
36329807 |
T |
|
| Q |
599 |
tgactagcataatatgaaaaatttaagttcaaatgtattttgaga-ttttagcctgtattcaaatttcaagtgtcttttggagtttaaggataaaataag |
697 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36329806 |
tgactagcataatatgaaaaatttaagttcaaatgtattttgagatttttagcctgtattcaaatttcaagtgtcttttggagtttaagaataaaataag |
36329707 |
T |
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| Q |
698 |
cactaaccacattgttatatttctgtttgcaaagcattcnnnnnnnattgatgttgtctgtg |
759 |
Q |
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| T |
36329706 |
cactaaccacattgttatatttctgtttgcaaagcattctttttttattgatgttgtctgtg |
36329645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 36330388 - 36330073
Alignment:
| Q |
19 |
gcaacgactatatccttttatgaaaaagtagatatagggttttcaactataggagctatagcttctgaatttagaccaagatctaaatttgagagagaag |
118 |
Q |
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| T |
36330388 |
gcaacgactatatccttttatgaaaaagtagatatagggttttcaactataggagctatagcttctgaatttagaccaagatctaaatttgagagagaag |
36330289 |
T |
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| Q |
119 |
tagctgcactagtactggaacctcatagaaatgatggttctagacttaacaaggtaatgatcttgtttacaattgagtttgacaacattgatttatgaag |
218 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
36330288 |
tagctgcactagtactggaagctcatagagatgatggttctagacttaacaaggtaatgatgttgtttacaattgagtttgacaacattgatttgtgaag |
36330189 |
T |
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| Q |
219 |
ttaactcattagggtttaacatacttgggtgcttttaaattttacaagtcaaactttaatttgtttgttaagttgatgaccatgtattattagtaagaag |
318 |
Q |
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| T |
36330188 |
ttaactcattagggtttaacatacttgggtgcttttaaattttacaagtcaaactttaatttgtatgttaagttgatgaccatgtattattagtaagaag |
36330089 |
T |
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| Q |
319 |
atttgaatctaaaatg |
334 |
Q |
| |
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|||||||||||||||| |
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| T |
36330088 |
atttgaatctaaaatg |
36330073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 44369462 - 44369379
Alignment:
| Q |
48 |
agatatagggttttcaactataggagctatagcttctgaatttagaccaagatctaaatttgagagagaagtagctgcactagt |
131 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||| ||| ||| || |||||||||| || | ||||||||||| |
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| T |
44369462 |
agatctagggttttcaactataggagcaatagcttctgaatttgaacccagaactgaatttgagaggaaaatggctgcactagt |
44369379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 52929542 - 52929484
Alignment:
| Q |
33 |
cttttatgaaaaagtagatatagggttttcaactataggagctatagcttctgaattta |
91 |
Q |
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|||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
52929542 |
ctttgatgaaaagatagatctagggttttcaactataggagctatagcttctgaattta |
52929484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 20238015 - 20238098
Alignment:
| Q |
48 |
agatatagggttttcaactataggagctatagcttctgaatttagaccaagatctaaatttgagagagaagtagctgcactagt |
131 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||| ||| ||| || |||||||||| || | ||||||||||| |
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| T |
20238015 |
agatctagggttttcaactataggagcaatagcttctgaatttgaacccagaactgaatttgagaggaaaatggctgcactagt |
20238098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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