View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9011_low_121 (Length: 283)
Name: NF9011_low_121
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_121 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 17612052 - 17611804
Alignment:
| Q |
17 |
cagagacatactcattcatgcagctattataactgtttatacatcctagaggaaatgaaatttgcaatccgaatagaatgacgaataaaagtgaatagct |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17612052 |
cagagacatactcattcatgcagctattataactgtttatacatcctagaggaaatgaaatttgcaatccgaatagaatgatgaataaaagtgaatagct |
17611953 |
T |
|
| Q |
117 |
aagacaagatgattgactagtttttcctgaaaaatcttaatcttcatgcaggtaaatagggttttacctttctgatgggtccggacccagatcgagctgg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17611952 |
aagacaagatgattgactagtttttcctgaaaaatcttaatcttcatgcaggtaaatagagttttacctttctgatgggtccggacccagatcgagctgg |
17611853 |
T |
|
| Q |
217 |
cattggttgttcaacctattaagacaattacaatgaatatcacaatttc |
265 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17611852 |
cactggttgttcaacctattaagacaattacaatgaatatcacaatttc |
17611804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 17624865 - 17624620
Alignment:
| Q |
19 |
gagacatactcattcatgcagctattataactgtttatacatcctagaggaaatgaaatttgcaatccgaatagaatgacgaataaaagtgaatagctaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| |||||||| || ||||||| | | ||||| |||||||||| |
|
|
| T |
17624865 |
gagacatactcattcatgcagctattataattgtttatatatc-tagaggaaatgaatattgcaatctaaacagaatgatgcaaaaaagcgaatagctaa |
17624767 |
T |
|
| Q |
119 |
gacaagatgattgactagtttttcctgaaaaatcttaatcttcatgcaggtaaatagggttttacctttctgatgggtccggacccagatcgagctggca |
218 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17624766 |
gacaggatgattgactattttttcctgaaaaatcttaatcttcatgcaagtaaatagaattttacctttctgatgggtccggatccagatcgagctggca |
17624667 |
T |
|
| Q |
219 |
ttggttgttcaacctattaagacaattacaatgaatatcacaatttc |
265 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
17624666 |
ttggttgttcaacctattaagacgattacaacgaatatcacaatttc |
17624620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 17669253 - 17669014
Alignment:
| Q |
19 |
gagacatactcattcatgcagctattataactgtttatacatcctagaggaaatgaaatttgcaatccgaatagaatgacgaataaaagtgaatagctaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| |||||||| || ||||||| | | ||||| |||||||||| |
|
|
| T |
17669253 |
gagacatactcattcatgcagctattataattgtttatatatc-tagaggaaatgaatattgcaatctaaacagaatgatgcaaaaaagcgaatagctaa |
17669155 |
T |
|
| Q |
119 |
gacaagatgattgactagtttttcctgaaaaatcttaatcttcatgcaggtaaatagggttttacctttctgatgggtccggacccagatcgagctggca |
218 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||| |||||||| |
|
|
| T |
17669154 |
gacaggatgattgactattttttcctgaaaaatcttaatcttcatgcaagtaaataaaattttacctttctgatgggtccg------gatccagctggca |
17669061 |
T |
|
| Q |
219 |
ttggttgttcaacctattaagacaattacaatgaatatcacaatttc |
265 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
17669060 |
ttggttgttcaacctattaagacgattacaacgaatatcacaatttc |
17669014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University