View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_122 (Length: 281)
Name: NF9011_low_122
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_122 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 19314745 - 19314970
Alignment:
| Q |
17 |
atttaacaatgcaggtgacattcccaataactctaaccgtaattctccaaaggaggacgtttcatgcaattcgaatgatgattgtccaacaatattatat |
116 |
Q |
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| T |
19314745 |
atttaacaatgcaggtgacattcccaataactctaaccgtaattctccaaaggaggacgttttttgcaattcgaatgatgattgtccaacaatattatat |
19314844 |
T |
|
| Q |
117 |
tatgtatcaaagtgtgtttataatttttgtgagtactggtgaacatattaattatgtttaataataattatgttacatctaatcatataattttaattgt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
19314845 |
tatgtatcaaagtgtgtttataatttttgtgagtactggtgaacatattaattatgtttaaaaataattatgttacatctaatcatataattttaattgt |
19314944 |
T |
|
| Q |
217 |
atgtcataatacattatgtttttatc |
242 |
Q |
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|||||||||||||||||||||||||| |
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| T |
19314945 |
atgtcataatacattatgtttttatc |
19314970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 19328499 - 19328573
Alignment:
| Q |
153 |
tggtgaacatattaattatgtttaataataattatgttacatctaatcatataattttaattgtatgtcataata |
227 |
Q |
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||||||| |||||||||| |||||| |||||||||||||| ||||| | |||||||||| ||||||||||||||| |
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| T |
19328499 |
tggtgaatatattaattaagtttaaaaataattatgttacttctaagcgtataattttatttgtatgtcataata |
19328573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 22049767 - 22049707
Alignment:
| Q |
166 |
aattatgtttaataataattatgttacatctaatcatataattttaattgtatgtcataat |
226 |
Q |
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| T |
22049767 |
aattaagtttaaaaatcattatcttacctctaaacatacaattttatttgtatgtcataat |
22049707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 213
Target Start/End: Complemental strand, 3025214 - 3025095
Alignment:
| Q |
94 |
atgattgtccaacaatattatattatgtatcaaagtgtgtttataatttttgtgagtactggtgaacatattaattatgtttaataataattatgttaca |
193 |
Q |
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|||||||||||||||| ||| | ||| |||||| ||| |||| ||| |||||||| |||| ||||||||||||||||||||| ||||||||| ||| |
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| T |
3025214 |
atgattgtccaacaattttagactatatatcaatatgtccttatcattattgtgagttctggagaacatattaattatgtttaaaaataattattttatg |
3025115 |
T |
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| Q |
194 |
tctaatcatataattttaat |
213 |
Q |
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||||| ||||||||| |||| |
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| T |
3025114 |
tctaagcatataattataat |
3025095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 26863415 - 26863469
Alignment:
| Q |
173 |
tttaataataattatgttacatctaatcatataattttaattgtatgtcataata |
227 |
Q |
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||||| |||||||||||||| ||||| |||||||||||| |||||||| |||||| |
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| T |
26863415 |
tttaaaaataattatgttacttctaaacatataattttatttgtatgtaataata |
26863469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 26844535 - 26844589
Alignment:
| Q |
172 |
gtttaataataattatgttacatctaatcatataattttaattgtatgtcataat |
226 |
Q |
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|||||| |||||||||||||||| ||| |||||| ||||| |||||||| ||||| |
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| T |
26844535 |
gtttaaaaataattatgttacatataagcatatagttttatttgtatgtaataat |
26844589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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