View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_130 (Length: 253)
Name: NF9011_low_130
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_130 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 42271248 - 42271006
Alignment:
| Q |
11 |
aagcagaggcctagaagaatattatttactcacactgnnnnnnnccatagtatactttaaccctatatacctaacttaaaacacccttaaacttcacaaa |
110 |
Q |
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| T |
42271248 |
aagcaaaggcctagaagaatattatttactcacactgaaaaaaaccatcgtatactttaaccctatatacctaacttaaaacacccttaaacttcacaaa |
42271149 |
T |
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| Q |
111 |
atttctaacctaaaactgtaaaagatttgtctcttatatagcaataaaatttcttgccagtttcaataatatatagtaataaaaacatcagatatttatt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
42271148 |
atttctaacctaaaactgtaaaagatttgtctcttatatagcaataaaattttttgccagtttcaataatatatagcagtaaaaacatcagatatttatt |
42271049 |
T |
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| Q |
211 |
aataattaggaaattgtttactgtcatgaaggggttccattaa |
253 |
Q |
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| T |
42271048 |
aataattaggaaattgtttactgtcatgaaggggttccattaa |
42271006 |
T |
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