View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_131 (Length: 253)
Name: NF9011_low_131
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_131 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 45390207 - 45390442
Alignment:
| Q |
19 |
cccttcacacttacctcggagttcttcagatcagtttccaccaattccactcctgccaatcaattacatcaatcatttcattattccactacttatttca |
118 |
Q |
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| T |
45390207 |
cccttcacacttacctcggagttcttcagatcagtttccaccaattccactcctgccaatcaattacatcaatcatttcattattccactacttattaca |
45390306 |
T |
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| Q |
119 |
atgataattaacagattactcctcact-aaatttgattaagcattcaaatggagtgagacattcaaactaatgttttaagtttttacaaaaaccggacat |
217 |
Q |
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| T |
45390307 |
atgataattaacagattactcctcactaaaatttgattaagcattcaagtggagtgagacattcaaattaatgttttaagttttaacaaaaaccggacat |
45390406 |
T |
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| Q |
218 |
gatattccgcacacaatgatttagttgggttcagtc |
253 |
Q |
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| T |
45390407 |
gatattccgcacacaatgatttagttgggttcagtc |
45390442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 45386056 - 45386120
Alignment:
| Q |
19 |
cccttcacacttacctcggagttcttcagatcagtttccaccaattccactcctgccaatcaatt |
83 |
Q |
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| T |
45386056 |
cccttcacgcttacctcagagttcttcagattagcttccacccattccactcctgccaatcaatt |
45386120 |
T |
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