View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_137 (Length: 241)
Name: NF9011_low_137
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_137 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 23852605 - 23852837
Alignment:
| Q |
9 |
gacatcatcagagtgtaaataagtattgaaactgagatcaagaaaggacaattttgtgaggtttccaaggttatttgggatcttaccactcaaatgggag |
108 |
Q |
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| T |
23852605 |
gacatcatcagagtgtaaataagtattgaaactgagatcaagaaaggacaattttgtgaggtttccaaggttatttgggatcttaccactcaaatgggag |
23852704 |
T |
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| Q |
109 |
tcatagagagaaagaaattgtaactgattcatagaatggataaactttggtattggacttgaattgaaattgtttccactaaggtccaaataactaagat |
208 |
Q |
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| T |
23852705 |
tcatagagagaaagaaattgtaactgattcatagaatggataaactttggtattggacttgaattgaaattgtttccactaaggtccaaataactaagat |
23852804 |
T |
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| Q |
209 |
acttgaactgtgaatgagcaggatggatatact |
241 |
Q |
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| T |
23852805 |
acttgaactgtgaatgagcaggatggatatact |
23852837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 208
Target Start/End: Original strand, 22619298 - 22619496
Alignment:
| Q |
10 |
acatcatcagagtgtaaataagtattgaaactgagatcaagaaaggacaattttgtgaggtttccaaggttatttgggatcttaccactcaaatgggagt |
109 |
Q |
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| T |
22619298 |
acatcatcagagtgtaaataagaatttaaactgagatcaagaaagttcaattttgtgaggtttctaaggttatttgggattattccactcaaattggaat |
22619397 |
T |
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| Q |
110 |
catagagagaaagaaattgtaactgattcatagaatggataaactttggtattggacttgaattgaaattgtttccactaaggtccaaataactaagat |
208 |
Q |
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| T |
22619398 |
cagagatagaaaggaattttaactgattcattaaatggataaatgttggtattggacttgaatttaaattgtttccactaaggtctaaattactaagat |
22619496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 208
Target Start/End: Original strand, 23751905 - 23752103
Alignment:
| Q |
10 |
acatcatcagagtgtaaataagtattgaaactgagatcaagaaaggacaattttgtgaggtttccaaggttatttgggatcttaccactcaaatgggagt |
109 |
Q |
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|||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||| | |||||||||| ||| | |
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| T |
23751905 |
acatcatcagagtgtaaataagaatttaaactgagatcaagaaagttcaattttgtgaggtttctaaggttatttgggattattccactcaaattggaat |
23752004 |
T |
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| Q |
110 |
catagagagaaagaaattgtaactgattcatagaatggataaactttggtattggacttgaattgaaattgtttccactaaggtccaaataactaagat |
208 |
Q |
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| T |
23752005 |
cagagatagaaaggaattttaactgattcattaaatggataaatgttggtattggacttgaatttaaattgtttccactaaggtctaaattactaagat |
23752103 |
T |
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