View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_139 (Length: 232)
Name: NF9011_low_139
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_139 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 43936545 - 43936350
Alignment:
| Q |
21 |
acaatcttaatgaattaaaaggttgtgaatgtgatggaatgaagagagtaaaataaaaggaagaggattgagtgagtgagagggaccagaccgtatacgg |
120 |
Q |
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| T |
43936545 |
acaatcttaatgaattaaaaggttgtgaatgtgatggaatgaagagagtaaaataaaaggaagaggattgagtgagtgagagggaccagaccgtatacgg |
43936446 |
T |
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| Q |
121 |
aagaggaccgttttttggttactttatacggcttgtccaaatccaacacagctaagcctaagcctaaaatatatatacatggtccaaaatcaatgg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43936445 |
aagaggaccgttttttggttactttatacggcttgtccaaatccaacacagctaagcctaagcctaaaatatatatacatggtccaaaatcaatgg |
43936350 |
T |
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