View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9011_low_142 (Length: 224)

Name: NF9011_low_142
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9011_low_142
NF9011_low_142
[»] chr7 (3 HSPs)
chr7 (9-208)||(4300715-4300914)
chr7 (126-208)||(4300949-4301031)
chr7 (22-96)||(1366923-1366997)
[»] chr2 (4 HSPs)
chr2 (14-138)||(27955862-27955986)
chr2 (14-138)||(33054120-33054245)
chr2 (14-138)||(31634370-31634489)
chr2 (64-138)||(33051878-33051952)
[»] chr8 (6 HSPs)
chr8 (14-138)||(42890656-42890780)
chr8 (14-137)||(42891378-42891498)
chr8 (19-138)||(23570759-23570878)
chr8 (21-138)||(18180395-18180511)
chr8 (42-138)||(26375187-26375283)
chr8 (51-136)||(5646753-5646838)
[»] chr6 (4 HSPs)
chr6 (14-138)||(18717899-18718023)
chr6 (43-138)||(24442750-24442845)
chr6 (14-138)||(8048648-8048770)
chr6 (20-96)||(14238743-14238819)
[»] chr1 (2 HSPs)
chr1 (14-138)||(13443671-13443795)
chr1 (19-137)||(23987863-23987981)
[»] chr5 (1 HSPs)
chr5 (38-101)||(19497024-19497087)
[»] chr3 (1 HSPs)
chr3 (26-84)||(368611-368669)
[»] chr4 (1 HSPs)
chr4 (19-84)||(22691491-22691556)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 4300715 - 4300914
Alignment:
Q  9 agaagcagagacaatccgaacagaggagaagaaccaattccggttattaggatttgtaataacaaccatactattgttacgtaccgaacatcaaaatatg 108  Q
    |||| |||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4300715 agaaacagaaacaatccgaacagaggagaagaaccaattccgattattagggtttgtaataacaaccatactattgttacgtaccgaacatcaaaatatg 4300814  T
Q  109 ccaatgaatctgatttggaatactatgagccgcgacaaatcagtctcctaatatgttcagtcaccgatacatattgttagtgtggagtagactgatttgt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4300815 ccaatgaatctgatttggaatactatgagccgcgacaaatcagtctcctaatatgttcagtcaccgatacatattgttagtgtggagtagactgatttgt 4300914  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 4300949 - 4301031
Alignment:
Q  126 gaatactatgagccgcgacaaatcagtctcctaatatgttcagtcaccgatacatattgttagtgtggagtagactgatttgt 208  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||    
T  4300949 gaatactatgatccgcgacaaatcagtctcctaatatgttcggtcactgatacatattgttagtgtggaggagactgatttgt 4301031  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 1366923 - 1366997
Alignment:
Q  22 atccgaacagaggagaagaaccaattccggttattaggatttgtaataacaaccatactattgttacgtaccgaa 96  Q
    ||||||||||||||| || | ||||||||||||||||| || ||||||||||||||| |||||||| ||| ||||    
T  1366923 atccgaacagaggaggaggatcaattccggttattagggttcgtaataacaaccatattattgttatgtatcgaa 1366997  T

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Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 27955986 - 27955862
Alignment:
Q  14 cagagacaatccgaacagaggagaagaaccaattccggttattaggatttgtaataacaaccatactattgttacgtaccgaacatcaaaatatgccaat 113  Q
    |||| |||||||||||||||||| |||||||||||| ||||||||| |||||||||||| || |||||||||||||||||||| ||||||||||  ||||    
T  27955986 cagaaacaatccgaacagaggaggagaaccaattccagttattagggtttgtaataacatccctactattgttacgtaccgaaaatcaaaatatagcaat 27955887  T
Q  114 gaatctgatttggaatactatgagc 138  Q
    |||||||||||||||||||||||||    
T  27955886 gaatctgatttggaatactatgagc 27955862  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 33054245 - 33054120
Alignment:
Q  14 cagagacaatccgaacagaggagaagaaccaattccggttattaggatttgtaataacaaccatactattgttacgtaccgaacatcaaaatatgccaat 113  Q
    |||| |||| ||||||||||||| |  |||||||| |||||||||| || |||||||||| |||||||||||||||||||||| |||| || || |   |    
T  33054245 cagaaacaacccgaacagaggaggatgaccaattctggttattagggttcgtaataacaatcatactattgttacgtaccgaaaatcagaacatactcgt 33054146  T
Q  114 gaatctga-tttggaatactatgagc 138  Q
    |||||| | |||||||||||||||||    
T  33054145 gaatctaattttggaatactatgagc 33054120  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 31634370 - 31634489
Alignment:
Q  14 cagagacaatccgaacagaggagaagaaccaattccggttattaggatttgtaataacaaccatactattgttacgtaccgaacatcaaaatatgccaat 113  Q
    |||| |||||||||||||||||   ||||||||||| ||||||||| ||||||| |||| || |||     |||||||||||| |||||||||   ||||    
T  31634370 cagaaacaatccgaacagaggatgggaaccaattccagttattagggtttgtaaaaacatccctac-----ttacgtaccgaaaatcaaaatacagcaat 31634464  T
Q  114 gaatctgatttggaatactatgagc 138  Q
    ||||| |||||||||||||||||||    
T  31634465 gaatcagatttggaatactatgagc 31634489  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 138
Target Start/End: Original strand, 33051878 - 33051952
Alignment:
Q  64 gtaataacaaccatactattgttacgtaccgaacatcaaaatatgccaatgaatctgatttggaatactatgagc 138  Q
    ||||||||||||||||||||||||||||||||| |||| || ||  |  || |||||||||||||||||||||||    
T  33051878 gtaataacaaccatactattgttacgtaccgaaaatcagaacatatccgtggatctgatttggaatactatgagc 33051952  T

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Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 42890656 - 42890780
Alignment:
Q  14 cagagacaatccgaacagaggagaagaaccaattccggttattaggatttgtaataacaaccatactattgttacgtaccgaacatcaaaatatgccaat 113  Q
    |||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||| || || ||||||||||||||||| || |||||||||| ||    
T  42890656 cagaaacaatccgaacagaggaggagaaccaattccggttattagggtttgtaataacatccctattattgttacgtaccgaaaattaaaatatgccgat 42890755  T
Q  114 gaatctgatttggaatactatgagc 138  Q
    ||||||||||||||||| |||||||    
T  42890756 gaatctgatttggaatattatgagc 42890780  T

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Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 42891498 - 42891378
Alignment:
Q  14 cagagacaatccgaacagaggagaagaaccaattccggttattaggatttgtaataacaaccatactattgttacgtaccgaacatcaaaatatgccaat 113  Q
    |||| ||||||||||||||||||||   |||||||||||||||||| |||||||||||| || || ||||||||||||||||| ||||||||||| ||||    
T  42891498 cagaaacaatccgaacagaggagaa---ccaattccggttattagggtttgtaataacatccctattattgttacgtaccgaaaatcaaaatatgtcaat 42891402  T
Q  114 gaatctgatttggaatactatgag 137  Q
    ||||||||||||||||| ||||||    
T  42891401 gaatctgatttggaatattatgag 42891378  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 23570759 - 23570878
Alignment:
Q  19 acaatccgaacagaggagaagaaccaattccggttattaggatttgtaataacaaccatactattgttacgtaccgaacatcaaaatatgccaatgaatc 118  Q
    |||||| ||||||||||| |||||||||||  ||||| ||  || ||||||||| || || ||||||||||||||||| ||| ||||||  |||||||||    
T  23570759 acaatctgaacagaggaggagaaccaattcaagttatcagagttcgtaataacatccctattattgttacgtaccgaaaatccaaatatagcaatgaatc 23570858  T
Q  119 tgatttggaatactatgagc 138  Q
    ||||||||||||||||||||    
T  23570859 tgatttggaatactatgagc 23570878  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 18180511 - 18180395
Alignment:
Q  21 aatccgaacagaggagaagaaccaattccggttattaggatttgtaataacaaccatactattgttacgtaccgaacatcaaaatatgccaatgaatctg 120  Q
    |||||||||||  ||| |||||||||| ||||||||||| || |||||||||||| ||||||||||| ||| |||| |||| || || ||  ||||||||    
T  18180511 aatccgaacaggagaggagaaccaatttcggttattagggttcgtaataacaaccctactattgttatgtagcgaaaatcagaacatacc-gtgaatctg 18180413  T
Q  121 atttggaatactatgagc 138  Q
    |||||||||||| |||||    
T  18180412 atttggaatactgtgagc 18180395  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 26375187 - 26375283
Alignment:
Q  42 ccaattccggttattaggatttgtaataacaaccatactattgttacgtaccgaacatcaaaatatgccaatgaatctgatttggaatactatgagc 138  Q
    ||||||||||||| |||| || |||||||||||| ||||||||||| |||||||| || | || ||  |  ||||||||||||| ||||||||||||    
T  26375187 ccaattccggttagtagggttcgtaataacaaccctactattgttatgtaccgaaaattagaacatatccgtgaatctgatttgtaatactatgagc 26375283  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 136
Target Start/End: Complemental strand, 5646838 - 5646753
Alignment:
Q  51 gttattaggatttgtaataacaaccatactattgttacgtaccgaacatcaaaatatgccaatgaatctgatttggaatactatga 136  Q
    ||||||||| || |||||||||||||||||| |  ||||||| ||| || |||| || ||  | ||||||||||||| ||||||||    
T  5646838 gttattagggttcgtaataacaaccatactacttatacgtacagaaaattaaaacatacctgtaaatctgatttggagtactatga 5646753  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 18718023 - 18717899
Alignment:
Q  14 cagagacaatccgaacagaggagaagaaccaattccggttattaggatttgtaataacaaccatactattgttacgtaccgaacatcaaaatatgccaat 113  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||||| |||||||||||| ||  ||||||||||||||||||| ||||||| || || ||    
T  18718023 cagaaacaatctgaacagaggagtagaactaattccggttattagggtttgtaataacatcccaactattgttacgtaccgaaaatcaaaacatacctat 18717924  T
Q  114 gaatctgatttggaatactatgagc 138  Q
    | |||||||||||||||||||||||    
T  18717923 gtatctgatttggaatactatgagc 18717899  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 24442845 - 24442750
Alignment:
Q  43 caattccggttattaggatttgtaataacaaccatactattgttacgtaccgaacatcaaaatatgccaatgaatctgatttggaatactatgagc 138  Q
    ||||||||||||||||| ||  | |||||||||||||||||||||||||||||| |||| ||||| || |||||||||||||||||||||||||||    
T  24442845 caattccggttattagggttcattataacaaccatactattgttacgtaccgaaaatcagaatatacccatgaatctgatttggaatactatgagc 24442750  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 8048770 - 8048648
Alignment:
Q  14 cagagacaatccgaacagaggagaagaaccaattccggttattaggattt-gtaataacaaccatactattgttacgtaccgaacatcaaaatatgccaa 112  Q
    |||| |||||||||||| ||||| |   ||||||||| ||||||||  || ||||||| || ||||||||||||||||||| || |||| || || ||      
T  8048770 cagaaacaatccgaacataggagga---ccaattccgattattaggccttcgtaataaaaaacatactattgttacgtaccaaaaatcagaacatacctg 8048674  T
Q  113 tgaatctgatttggaatactatgagc 138  Q
    ||||||||||||||||||||||||||    
T  8048673 tgaatctgatttggaatactatgagc 8048648  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 14238743 - 14238819
Alignment:
Q  20 caatccgaacagaggagaagaaccaattccggttattaggatttgtaataacaaccatactattgttacgtaccgaa 96  Q
    |||||||||| | |||| | |||||||||||||||||| | || | | ||||| |||||||||||||||||| ||||    
T  14238743 caatccgaacgggggaggataaccaattccggttattaaggttcgcattaacatccatactattgttacgtatcgaa 14238819  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 13443795 - 13443671
Alignment:
Q  14 cagagacaatccgaacagaggagaagaaccaattccggttattaggatttgtaataacaaccatactattgttacgtaccgaacatcaaaatatgccaat 113  Q
    |||| ||||||||||| |||||| |||||||||||| | ||||||| |||||||||||| || |||| ||||||||||||||| ||||||||||||||||    
T  13443795 cagaaacaatccgaacggaggaggagaaccaattccagctattagggtttgtaataacatccctactgttgttacgtaccgaaaatcaaaatatgccaat 13443696  T
Q  114 gaatctgatttggaatactatgagc 138  Q
      ||||||||||||||| |||||||    
T  13443695 tcatctgatttggaatattatgagc 13443671  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 23987863 - 23987981
Alignment:
Q  19 acaatccgaacagaggagaagaaccaattccggttattaggatttgtaataacaaccatactattgttacgtaccgaacatcaaaatatgccaatgaatc 118  Q
    ||||||||||||||| || |  |||||||| |||||||||| ||  ||||||||| |||||||||| || |||||||| |||| ||||| || |||||||    
T  23987863 acaatccgaacagagaaggatgaccaattctggttattagggttcttaataacaatcatactattgatatgtaccgaaaatcagaatatacctatgaatc 23987962  T
Q  119 tgatttggaatactatgag 137  Q
    |||| ||||||||||||||    
T  23987963 tgatctggaatactatgag 23987981  T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 19497087 - 19497024
Alignment:
Q  38 agaaccaattccggttattaggatttgtaataacaaccatactattgttacgtaccgaacatca 101  Q
    |||||||||||| ||||||||| || |||||||||||||||||||||||| |||||||| ||||    
T  19497087 agaaccaattccagttattagggttcgtaataacaaccatactattgttatgtaccgaaaatca 19497024  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 368669 - 368611
Alignment:
Q  26 gaacagaggagaagaaccaattccggttattaggatttgtaataacaaccatactattg 84  Q
    |||||| ||||||| |||||||||  |||||||| ||||||||||||| || |||||||    
T  368669 gaacaggggagaagtaccaattccaattattagggtttgtaataacaatcagactattg 368611  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 22691491 - 22691556
Alignment:
Q  19 acaatccgaacagaggagaagaaccaattccggttattaggatttgtaataacaaccatactattg 84  Q
    |||||| ||||||  ||| |||| ||||||||||||||||| || |||||||||| || |||||||    
T  22691491 acaatctgaacaggagaggagaatcaattccggttattagggttcgtaataacaatcagactattg 22691556  T

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