View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_156 (Length: 207)
Name: NF9011_low_156
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_156 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 44871690 - 44871860
Alignment:
| Q |
20 |
gataccatagtaaccgtagcttttttaacagaactggaacaagaggtttcagaatcctcatcagaagttgattcagaacttgtactagaggcttcagagt |
119 |
Q |
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| T |
44871690 |
gataccatagtaaccgtagcttttttaacagaactggaacaagaggtttcagaatcctcatcagaagttgattcagaacttgtactagaggcttcagagt |
44871789 |
T |
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| Q |
120 |
cctcatcagaagttgattcatcaaattccaaaggaattgctattgcttctgcttcctcctcagattctctg |
190 |
Q |
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| T |
44871790 |
cctcatcagaagttgattcatcaaattccgaaggaattgctattgcttctgcttcctcctcagattctctg |
44871860 |
T |
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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 55 - 177
Target Start/End: Complemental strand, 47522554 - 47522432
Alignment:
| Q |
55 |
ggaacaagaggtttcagaatcctcatcagaagttgattcagaacttgtactagaggcttcagagtcctcatcagaagttgattcatcaaattccaaagga |
154 |
Q |
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| T |
47522554 |
ggaactagaggtttcagaatcctcatcagaagttgattcagaactggcactagaggcttcagaatcgtcatcagaagttgattcatctgattcagaagaa |
47522455 |
T |
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| Q |
155 |
attgctattgcttctgcttcctc |
177 |
Q |
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| T |
47522454 |
attgatattgctgctgcttcctc |
47522432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 47528206 - 47528146
Alignment:
| Q |
27 |
tagtaaccgtagcttttttaacagaactggaacaagaggtttcagaatcctcatcagaagt |
87 |
Q |
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| T |
47528206 |
tagtaaccgtggcttttttaacagaaatgaaactagaggcttcagaatcctcattagaagt |
47528146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 47522516 - 47522470
Alignment:
| Q |
48 |
cagaactggaacaagaggtttcagaatcctcatcagaagttgattca |
94 |
Q |
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| T |
47522516 |
cagaactggcactagaggcttcagaatcgtcatcagaagttgattca |
47522470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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