View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9011_low_16 (Length: 681)

Name: NF9011_low_16
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9011_low_16
NF9011_low_16
[»] chr5 (5 HSPs)
chr5 (17-585)||(13472923-13473491)
chr5 (583-673)||(13473540-13473630)
chr5 (405-454)||(24300871-24300920)
chr5 (405-454)||(24372395-24372444)
chr5 (395-443)||(6291670-6291718)
[»] chr8 (1 HSPs)
chr8 (299-484)||(16952479-16952667)
[»] chr1 (2 HSPs)
chr1 (400-452)||(44382624-44382676)
chr1 (404-454)||(3584330-3584380)
[»] scaffold0061 (1 HSPs)
scaffold0061 (385-454)||(11569-11638)
[»] chr3 (2 HSPs)
chr3 (389-452)||(51046809-51046872)
chr3 (404-456)||(24409258-24409310)
[»] chr6 (1 HSPs)
chr6 (388-458)||(7779871-7779941)
[»] chr7 (1 HSPs)
chr7 (385-441)||(1555236-1555292)
[»] chr2 (1 HSPs)
chr2 (388-444)||(14825032-14825088)


Alignment Details
Target: chr5 (Bit Score: 477; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 17 - 585
Target Start/End: Original strand, 13472923 - 13473491
Alignment:
Q  17 aaatagcatatacatgtcgttcattagtgctttgatattgaaattcataactttagcaaagtggcacaaatgcgccctgtcacttagtggacagctactt 116  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13472923 aaatagcatatacatgtcattcattagtgctttgatattgaaattcataactttagcaaagtggcacaaattcgccctgtcacttagtggacagctactt 13473022  T
Q  117 cacttagtttcctccatatataggcaattcataactatatttatgttttcttgtctttttacttttaatgctaattttaaatttgagtcaacttacttct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13473023 cacttagtttcctccatatataggcaattcataactatatttatgttttcttgtctttttacttttaatgccaattttaaatttgagtcaacttacttct 13473122  T
Q  217 ctattgatttataatgtgagttcttagatggatcactttcataattggtccaccgtggaccaatacttaaaattaacgagtatcaacgatattatttaaa 316  Q
    || ||||||||||||||||||||||||||| | ||| ||||||| || || |  |||||||||||||||||||||| ||||||||||||||||||||| |    
T  13473123 ctgttgatttataatgtgagttcttagatgaaccaccttcataagtgatctattgtggaccaatacttaaaattaatgagtatcaacgatattatttata 13473222  T
Q  317 aacaaaaacacatgacccttctcatatttacaactaacatggtgaatgtattgatttcggatataagatatatatttattttctgtcgttttaatcaaac 416  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13473223 aacaaaaacacacgacccttctcatatttacaactaacatggtgaatgtattgatttcggatataagatatatatttattttctgtcgttttaatcaaac 13473322  T
Q  417 cgatttcaattaaatcattatttcaatcataaaaatgaagagagtcgtcaacaactaacactaagaaataacatatgtcgtttgagttttaaacaatttt 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||| ||||||||| ||||||||||||||    
T  13473323 cgatttcaattaaatcattatttcaatcataaaaatgaagagagttgtcaacaactatcactaaaaaataacatacgtcgtttgaattttaaacaatttt 13473422  T
Q  517 taagtattagtccttgatgatggaccacttatgaatcacatgacctcttctttcaatgcaatttatttt 585  Q
    ||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13473423 taagtaacagtcctcgatgatggaccacttatgaatcacatgacctcttctttcaatgcaatttatttt 13473491  T

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Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 583 - 673
Target Start/End: Original strand, 13473540 - 13473630
Alignment:
Q  583 ttttcacttcatttccttcaatttccttatagctttcaaaacccatattttattgagtccaccccacgtacctagattaccaccaaactcg 673  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||    
T  13473540 ttttcacttcatttccttcaatttccttatagctttcaaaacccatattttattgactccaccccacgtacctagattaccaactaactcg 13473630  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 24300920 - 24300871
Alignment:
Q  405 ttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatga 454  Q
    ||||||||||||||  || |||||| ||| ||||||||||||||||||||    
T  24300920 ttttaatcaaaccggatttaattaagtcaatatttcaatcataaaaatga 24300871  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Original strand, 24372395 - 24372444
Alignment:
Q  405 ttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatga 454  Q
    ||||||||||||||  || |||||| ||| ||||||||||||||||||||    
T  24372395 ttttaatcaaaccggatttaattaagtcaatatttcaatcataaaaatga 24372444  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 395 - 443
Target Start/End: Original strand, 6291670 - 6291718
Alignment:
Q  395 ttttctgtcgttttaatcaaaccgatttcaattaaatcattatttcaat 443  Q
    |||| ||| ||||||||||||  ||| ||||||||||||||||||||||    
T  6291670 ttttatgttgttttaatcaaaatgatatcaattaaatcattatttcaat 6291718  T

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Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 299 - 484
Target Start/End: Complemental strand, 16952667 - 16952479
Alignment:
Q  299 tcaacgatattatttaaaaacaaaaacacatgacccttctcatatttacaactaacatggtgaatgtattgatttcgg----atataagatatatattta 394  Q
    ||||||||| |||| ||||| |||| ||||||| |||| ||||||||||  |||| ||||||| |  |||||| ||||    |||  || || |||||||    
T  16952667 tcaacgatactattgaaaaataaaa-cacatgatccttttcatatttacggctaagatggtgacttgattgatatcggttcaataggagctacatattta 16952569  T
Q  395 ttttctgtcgttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatgaagagagtcgtcaacaactaacactaagaaa 484  Q
    ||||| || ||||||||||||||| |||||||||| ||| |||||||||| ||||||||| |||  || | |||| ||| ||||||||||    
T  16952568 ttttccgttgttttaatcaaaccggtttcaattaagtcactatttcaatcttaaaaatgaggaggatcattaacatctatcactaagaaa 16952479  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 400 - 452
Target Start/End: Original strand, 44382624 - 44382676
Alignment:
Q  400 tgtcgttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaat 452  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||||||||    
T  44382624 tgtcgttatgatcaaactgatatcaattaaatcattatttcaatcataaaaat 44382676  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 3584330 - 3584380
Alignment:
Q  404 gttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatga 454  Q
    ||||||||||||| | | ||||||||||||||||||||||| |||||||||    
T  3584330 gttttaatcaaactggtatcaattaaatcattatttcaatcttaaaaatga 3584380  T

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Target: scaffold0061 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 385 - 454
Target Start/End: Original strand, 11569 - 11638
Alignment:
Q  385 tatatatttattttctgtcgttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatga 454  Q
    |||||||||||||||  | ||||||||| || | || |||| ||||| ||||||||||||||||||||||    
T  11569 tatatatttattttccattgttttaatccaatctatatcaaataaattattatttcaatcataaaaatga 11638  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 389 - 452
Target Start/End: Original strand, 51046809 - 51046872
Alignment:
Q  389 tatttattttctgtcgttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaat 452  Q
    |||||| ||| ||| ||||||||||||  |||  |||||||||||||||||||||| |||||||    
T  51046809 tatttagtttttgttgttttaatcaaattgataacaattaaatcattatttcaatcgtaaaaat 51046872  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 404 - 456
Target Start/End: Complemental strand, 24409310 - 24409258
Alignment:
Q  404 gttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatgaag 456  Q
    |||||||||||||  || |||||||||||||||||| |||| ||||| |||||    
T  24409310 gttttaatcaaactaatatcaattaaatcattatttgaatcttaaaattgaag 24409258  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 388 - 458
Target Start/End: Original strand, 7779871 - 7779941
Alignment:
Q  388 atatttattttctgtcgttttaatcaaaccgatttcaattaaatcattatttcaatcataaaaatgaagag 458  Q
    ||||||||||||  | ||||||||||||  ||| ||| |||| |||||||||||||| ||||||| |||||    
T  7779871 atatttattttccatagttttaatcaaattgatatcagttaagtcattatttcaatcgtaaaaataaagag 7779941  T

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Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 1555236 - 1555292
Alignment:
Q  385 tatatatttattttctgtcgttttaatcaaaccgatttcaattaaatcattatttca 441  Q
    |||||||||||||| | | ||||||||||||||||| ||| |||| | |||||||||    
T  1555236 tatatatttattttttcttgttttaatcaaaccgatgtcatttaatttattatttca 1555292  T

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Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 388 - 444
Target Start/End: Complemental strand, 14825088 - 14825032
Alignment:
Q  388 atatttattttctgtcgttttaatcaaaccgatttcaattaaatcattatttcaatc 444  Q
    ||||||||||| ||| | ||||||||||| ||| ||||| |||| ||||||||||||    
T  14825088 atatttattttatgttggtttaatcaaactgatatcaatcaaataattatttcaatc 14825032  T

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